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1 # OpenMS
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2
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3 If there is a tool that is part of OpenMS but not available here, let
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4 John Chilton (jmchilton@gmail.com) and he will try to add it.
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5
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6 These tools require Galaxy to be equipped with common proteomic
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7 datatypes. These can be obtained by installing Ira Cooke's ProtK via
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8 the tool shed or merging the changesets from the following repository
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9 into your Galaxy instance:
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10
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11 https://bitbucket.org/galaxyp/galaxy-dist-proteomics
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12
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13 # Installing
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14
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15 These tools all require OpenMS (at least version 1.10) and may require
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16 other dependencies (such as PepNovo for instance).
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17
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18 For Galaxy-P we are installing this tool via CloudBioLinux
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19 (https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While
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20 this fabric script may not be exactly appropriate for your environment
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21 it may serve as a template for how to install this software.
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22
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23 # Obtaining Tools
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24
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25 Repositories for all Galaxy-P tools can be found at
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26 https:/bitbucket.org/galaxyp/.
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27
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28 # Contact
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29
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30 Please send suggestions for improvements and bug reports to
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31 jmchilton@gmail.com.
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32
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33 # License
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34
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35 All Galaxy-P tools are licensed under the Apache License Version 2.0
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36 unless otherwise documented.
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37
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38 # Tool Versioning
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39
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40 Galaxy-P tools will have versions of the form X.Y.Z. Versions
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41 differing only after the second decimal should be completely
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42 compatible with each other. Breaking changes should result in an
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43 increment of the number before and/or after the first decimal. All
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44 tools of version less than 1.0.0 should be considered beta.
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