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1 <tool id="openms_feature_filter" version="0.1.0" name="Feature Filter">
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2 <description>
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3 Filters feature results by different criteria.
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4 </description>
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5 <macros>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio" />
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9 <expand macro="requires" />
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10 <command interpreter="python">
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11 openms_wrapper.py --executable 'FileFilter' --config $config
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12 </command>
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13 <configfiles>
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14 <configfile name="config">[simple_options]
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15 in=$input1
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16 in_type=featureXML
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17 out=$output
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18 out_type=featureXML
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19 feature!q=${min_quality or ''}:${max_quality or ''}
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20 </configfile>
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21 </configfiles>
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22 <inputs>
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23 <param name="input1" label="Input" type="data" format="featurexml" />
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24 <param name="min_quality" label="Minimum Quality" help="Leave empty to specify no minimum." value="" default="" type="float" />
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25 <param name="max_quality" label="Maximum Quality" help="Leave empty to specify no maximum." value="" default="" type="float" />
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26 </inputs>
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27 <outputs>
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28 <data format="featurexml" name="output" />
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29 </outputs>
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30 <help>
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31 **What it does**
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32
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33 **Citation**
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34
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35 For the underlying tool, please cite ``Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008. OpenMS – an Open-Source Software Framework for Mass Spectrometry. BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.``
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36
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37 If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-openms
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38 </help>
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39 </tool>
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