|
2
|
1 <tool id="openms_feature_linker_labeled" version="0.1.0" name="Feature Linker (Labeled)">
|
|
|
2 <description>
|
|
|
3 Groups corresponding isotope-labeled features in a feature map.
|
|
|
4 </description>
|
|
|
5 <macros>
|
|
|
6 <import>macros.xml</import>
|
|
|
7 </macros>
|
|
|
8 <expand macro="stdio" />
|
|
|
9 <expand macro="requires" />
|
|
|
10 <command interpreter="python">
|
|
|
11 openms_wrapper.py --executable 'FeatureLinkedLabeled' --config $config
|
|
|
12 </command>
|
|
|
13 <configfiles>
|
|
|
14 <configfile name="config">[simple_options]
|
|
|
15 in=$input1
|
|
|
16 out=$output
|
|
|
17 </configfile>
|
|
|
18 </configfiles>
|
|
|
19 <inputs>
|
|
|
20 <param name="input1" label="Input Features" type="data" format="featurexml" />
|
|
|
21 </inputs>
|
|
|
22 <outputs>
|
|
|
23 <data format="consensusxml" name="output" />
|
|
|
24 </outputs>
|
|
|
25 <help>
|
|
|
26 **What it does**
|
|
|
27
|
|
|
28 This tool provides an algorithm for grouping corresponding features in isotope-labeled experiments. For more details and algorithm-specific parameters (set in the ini file) see "Detailed Description" in the algorithm documentation.
|
|
|
29
|
|
|
30 FeatureLinkerLabeled takes one feature map (featureXML file) and stores the corresponding features in a consensus map (consensusXML file). Feature maps can be created from MS experiments (peak data) using one of the FeatureFinder TOPP tools.
|
|
|
31
|
|
|
32 **Citation**
|
|
|
33
|
|
|
34 For the underlying tool, please cite ``Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008. OpenMS – an Open-Source Software Framework for Mass Spectrometry. BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.``
|
|
|
35
|
|
|
36 If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-openms
|
|
|
37 </help>
|
|
|
38 </tool>
|
