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1 <tool id="openms_file_info" version="0.1.0" name="File Info">
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2 <description>
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3 Shows basic information about the file, such as data ranges and file type.
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4 </description>
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2
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5 <macros>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio" />
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9 <expand macro="requires" />
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0
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10 <command interpreter="python">
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11 openms_wrapper.py --executable 'FileInfo' --config $config
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12 </command>
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13 <configfiles>
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14 <configfile name="config">[simple_options]
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15 m=${m}
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16 p=${p}
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17 s=${s}
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18 d=${d}
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19 in=${in}
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20 in_type=${in.ext}
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21 out=${out}
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22 </configfile>
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23 </configfiles>
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24 <inputs>
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25 <param format="mzxml,mzml,mgf,pepxml,idxml" name="in" type="data" label="Input Mass Spec Related File"/>
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26 <param type="boolean" name="m" label="Show meta information about the whole experiment" />
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27 <param type="boolean" name="p" label="Shows data processing information" />
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28 <param type="boolean" name="s" label="Computes a five-number statistics of intensities, qualities, and widths" />
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29 <param type="boolean" name="d" label="Show detailed listing of all spectra and chromatograms (peak files only)" />
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30 <param type="boolean" name="c" label="Check for corrupt data in the file (peak files only)" />
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31 </inputs>
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32 <outputs>
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33 <data format="txt" name="out" />
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34 </outputs>
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35 <help>
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36 **What it does**
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37
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38 Shows basic information about the file, such as data ranges and file type.
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39
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40 **Citation**
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41
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42 For the underlying tool, please cite ``Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008. OpenMS – an Open-Source Software Framework for Mass Spectrometry. BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.``
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43
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44 If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-openms
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45 </help>
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46 </tool>
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