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1 <tool id="openms_file_info" version="0.1.0" name="File Info">
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2 <description>
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3 Shows basic information about the file, such as data ranges and file type.
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4 </description>
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5 <requirements>
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6 <requirement type="package">openms</requirement>
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7 </requirements>
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8 <command interpreter="python">
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9 openms_wrapper.py --executable 'FileInfo' --config $config
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10 </command>
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11 <configfiles>
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12 <configfile name="config">[simple_options]
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13 m=${m}
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14 p=${p}
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15 s=${s}
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16 d=${d}
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17 in=${in}
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18 in_type=${in.ext}
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19 out=${out}
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20 </configfile>
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21 </configfiles>
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22 <inputs>
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23 <param format="mzxml,mzml,mgf,pepxml,idxml" name="in" type="data" label="Input Mass Spec Related File"/>
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24 <param type="boolean" name="m" label="Show meta information about the whole experiment" />
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25 <param type="boolean" name="p" label="Shows data processing information" />
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26 <param type="boolean" name="s" label="Computes a five-number statistics of intensities, qualities, and widths" />
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27 <param type="boolean" name="d" label="Show detailed listing of all spectra and chromatograms (peak files only)" />
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28 <param type="boolean" name="c" label="Check for corrupt data in the file (peak files only)" />
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29 </inputs>
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30 <outputs>
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31 <data format="txt" name="out" />
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32 </outputs>
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33 <help>
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34 **What it does**
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35
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36 Shows basic information about the file, such as data ranges and file type.
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37
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38 **Citation**
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39
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40 For the underlying tool, please cite ``Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008. OpenMS – an Open-Source Software Framework for Mass Spectrometry. BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.``
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41
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42 If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-openms
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43 </help>
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44 </tool>
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