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comparison id_file_converter.xml @ 4:1183846e70a1 draft

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author galaxyp
date Wed, 19 Jun 2013 13:15:44 -0400
parents cf0d72c7b482
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3:8fa16707e162 4:1183846e70a1
11 openms_wrapper.py --executable 'IDFileConverter' --config $config 11 openms_wrapper.py --executable 'IDFileConverter' --config $config
12 </command> 12 </command>
13 <configfiles> 13 <configfiles>
14 <configfile name="config">[simple_options] 14 <configfile name="config">[simple_options]
15 in=${in} 15 in=${in}
16 in_type=${in.ext}
17 out=${out} 16 out=${out}
18 out_type=${output_type} 17 out_type=${output_type}
19 </configfile> 18 </configfile>
20 </configfiles> 19 </configfiles>
21 <inputs> 20 <inputs>
22 <param format="pepxml,protxml,idxml" name="in" type="data" label="Input Identification File"/> 21 <param format="pepxml,protxml,idxml" name="in" type="data" label="Input Identification File"/>
23 <param name="output_type" type="select" label="Output Type"> 22 <param name="output_type" type="select" label="Output Type">
24 <option value="idxml">idXML</option> 23 <option value="idXML">idXML</option>
25 <option value="pepxml">pepXM</option> 24 <option value="pepXML">pepXML</option>
26 <option value="mzid">mzIdentML</option> 25 <option value="mzid">mzIdentML</option>
27 <option value="fasta">FASTA</option> 26 <option value="FASTA">FASTA</option>
28 </param> 27 </param>
29 </inputs> 28 </inputs>
30 <outputs> 29 <outputs>
31 <data format="idxml" name="out"> 30 <data format="idxml" name="out">
32 <change_format> 31 <change_format>
33 <when input="output_type" value="pepxml" format="pepxml" /> 32 <when input="output_type" value="pepXML" format="pepxml" />
34 <when input="output_type" value="mzid" format="mzid" /> 33 <when input="output_type" value="mzid" format="mzid" />
35 <when input="output_type" value="fasta" format="fasta" /> 34 <when input="output_type" value="FASTA" format="fasta" />
36 </change_format> 35 </change_format>
37 </data> 36 </data>
38 </outputs> 37 </outputs>
39 <help> 38 <help>
40 **What it does** 39 **What it does**