Mercurial > repos > galaxyp > openms

comparison protein_quantifier.xml @ 4:1183846e70a1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author galaxyp
date Wed, 19 Jun 2013 13:15:44 -0400
parents cf0d72c7b482
children
comparison
equal deleted inserted replaced
3:8fa16707e162 4:1183846e70a1
21 top=$top 21 top=$top
22 format!quoting=none 22 format!quoting=none
23 </configfile> 23 </configfile>
24 </configfiles> 24 </configfiles>
25 <inputs> 25 <inputs>
26 <expand macro="map_input" /> 26 <conditional name="type">
27 <param name="input_type" type="select" label="Input Type">
28 <option value="featurexml">Features (FeatureXML)</option>
29 <option value="consensusxml">Consensus (ConsensusXML)</option>
30 </param>
31 <when value="featurexml">
32 <param format="featurexml" name="map_input" type="data" label="Input Features" />
33 </when>
34 <when value="consensusxml">
35 <param format="consensusxml" name="map_input" type="data" label="Input Consensus" />
36 </when>
37 </conditional>
27 <conditional name="protein_prophet"> 38 <conditional name="protein_prophet">
28 <param name="use" label="Use ProteinProphet Results (converted to idXML)" help="For information about indistinguishable proteins." type="boolean" /> 39 <param name="use" label="Use ProteinProphet Results (converted to idXML)" help="For information about indistinguishable proteins." type="boolean" />
29 <when value="false"> 40 <when value="false">
30 </when> 41 </when>
31 <when value="true"> 42 <when value="true">
32 <param name="protxml" label="Protein/Peptide Identifications Input" type="data" format="idxml" /> 43 <param name="protxml" label="Protein/Peptide Identifications Input" type="data" format="idxml" />
33 </when> 44 </when>
34 </conditional> 45 </conditional>
35 <param name="top" label="Top" value="0" type="integer" /> 46 <param name="top" label="Top" value="3" type="integer" help="Calculate protein abundance from this number of proteotypic peptides (most abundant first; '0' for all) (default: '3' min: '0')" />
36 </inputs> 47 </inputs>
37 <outputs> 48 <outputs>
38 <data format="tabular" name="protein_output" /> 49 <data format="tabular" name="protein_output" />
39 <data format="tabular" name="peptide_output" /> 50 <data format="tabular" name="peptide_output" />
40 </outputs> 51 </outputs>