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author galaxyp
date Fri, 10 May 2013 17:31:05 -0400
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1 TODO: Document this tool repository. 1 # OpenMS
2
3 If there is a tool that is part of OpenMS but not available here, let
4 John Chilton (jmchilton@gmail.com) and he will try to add it.
5
6 These tools require Galaxy to be equipped with common proteomic
7 datatypes. These can be obtained by installing Ira Cooke's ProtK via
8 the tool shed or merging the changesets from the following repository
9 into your Galaxy instance:
10
11 https://bitbucket.org/galaxyp/galaxy-dist-proteomics
12
13 # Installing
14
15 These tools all require OpenMS (at least version 1.10) and may require
16 other dependencies (such as PepNovo for instance).
17
18 For Galaxy-P we are installing this tool via CloudBioLinux
19 (https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While
20 this fabric script may not be exactly appropriate for your environment
21 it may serve as a template for how to install this software.
22
2 # Obtaining Tools 23 # Obtaining Tools
3 24
4 Repositories for all Galaxy-P tools can be found at 25 Repositories for all Galaxy-P tools can be found at
5 https:/bitbucket.org/galaxyp/. 26 https:/bitbucket.org/galaxyp/.
6 27