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comparison build_mods_loc.py @ 2:cf0d72c7b482 draft

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Update.
author galaxyp
date Fri, 10 May 2013 17:31:05 -0400
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1:5c65f8116244 2:cf0d72c7b482
1 #!/usr/bin/env python
2
3 import xml.etree.ElementTree as ET
4
5 tree = ET.parse('unimod.xml')
6 ns = '{http://www.unimod.org/xmlns/schema/unimod_2}'
7 modifications_el = tree.getroot().find('%smodifications' % ns)
8
9
10 def to_label(title, site):
11 return "%s (%s)" % (title, site)
12
13
14 labels = []
15 for mod in modifications_el.findall('%smod' % ns):
16 for specificity in mod.findall('%sspecificity' % ns):
17 title = mod.get('title')
18 site = specificity.get('site')
19 labels.append(to_label(title, site))
20
21 with open("openms_mods.loc", "w") as output:
22 for mod in sorted(labels, key=str.lower):
23 output.write("%s\n" % mod)