Mercurial > repos > galaxyp > openms

comparison feature_linker_labeled.xml @ 2:cf0d72c7b482 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Update.
author galaxyp
date Fri, 10 May 2013 17:31:05 -0400
parents
children
comparison
equal deleted inserted replaced
1:5c65f8116244 2:cf0d72c7b482
1 <tool id="openms_feature_linker_labeled" version="0.1.0" name="Feature Linker (Labeled)">
2 <description>
3 Groups corresponding isotope-labeled features in a feature map.
4 </description>
5 <macros>
6 <import>macros.xml</import>
7 </macros>
8 <expand macro="stdio" />
9 <expand macro="requires" />
10 <command interpreter="python">
11 openms_wrapper.py --executable 'FeatureLinkedLabeled' --config $config
12 </command>
13 <configfiles>
14 <configfile name="config">[simple_options]
15 in=$input1
16 out=$output
17 </configfile>
18 </configfiles>
19 <inputs>
20 <param name="input1" label="Input Features" type="data" format="featurexml" />
21 </inputs>
22 <outputs>
23 <data format="consensusxml" name="output" />
24 </outputs>
25 <help>
26 **What it does**
27
28 This tool provides an algorithm for grouping corresponding features in isotope-labeled experiments. For more details and algorithm-specific parameters (set in the ini file) see "Detailed Description" in the algorithm documentation.
29
30 FeatureLinkerLabeled takes one feature map (featureXML file) and stores the corresponding features in a consensus map (consensusXML file). Feature maps can be created from MS experiments (peak data) using one of the FeatureFinder TOPP tools.
31
32 **Citation**
33
34 For the underlying tool, please cite ``Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008. OpenMS – an Open-Source Software Framework for Mass Spectrometry. BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.``
35
36 If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-openms
37 </help>
38 </tool>