Mercurial > repos > galaxyp > openms
diff README.md @ 2:cf0d72c7b482 draft
Update.
author | galaxyp |
---|---|
date | Fri, 10 May 2013 17:31:05 -0400 |
parents | ba86fd127f5a |
children |
line wrap: on
line diff
--- a/README.md Wed Dec 19 00:33:53 2012 -0500 +++ b/README.md Fri May 10 17:31:05 2013 -0400 @@ -1,4 +1,25 @@ -TODO: Document this tool repository. +# OpenMS + +If there is a tool that is part of OpenMS but not available here, let +John Chilton (jmchilton@gmail.com) and he will try to add it. + +These tools require Galaxy to be equipped with common proteomic +datatypes. These can be obtained by installing Ira Cooke's ProtK via +the tool shed or merging the changesets from the following repository +into your Galaxy instance: + + https://bitbucket.org/galaxyp/galaxy-dist-proteomics + +# Installing + +These tools all require OpenMS (at least version 1.10) and may require +other dependencies (such as PepNovo for instance). + +For Galaxy-P we are installing this tool via CloudBioLinux +(https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While +this fabric script may not be exactly appropriate for your environment +it may serve as a template for how to install this software. + # Obtaining Tools Repositories for all Galaxy-P tools can be found at