diff README.md @ 2:cf0d72c7b482 draft

Update.
author galaxyp
date Fri, 10 May 2013 17:31:05 -0400
parents ba86fd127f5a
children
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--- a/README.md	Wed Dec 19 00:33:53 2012 -0500
+++ b/README.md	Fri May 10 17:31:05 2013 -0400
@@ -1,4 +1,25 @@
-TODO: Document this tool repository.
+# OpenMS
+
+If there is a tool that is part of OpenMS but not available here, let
+John Chilton (jmchilton@gmail.com) and he will try to add it.
+
+These tools require Galaxy to be equipped with common proteomic
+datatypes. These can be obtained by installing Ira Cooke's ProtK via
+the tool shed or merging the changesets from the following repository
+into your Galaxy instance:
+
+     https://bitbucket.org/galaxyp/galaxy-dist-proteomics
+
+# Installing
+
+These tools all require OpenMS (at least version 1.10) and may require
+other dependencies (such as PepNovo for instance).
+
+For Galaxy-P we are installing this tool via CloudBioLinux
+(https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While
+this fabric script may not be exactly appropriate for your environment
+it may serve as a template for how to install this software.
+
 # Obtaining Tools
 
 Repositories for all Galaxy-P tools can be found at