<tool id="openms_feature_filter" version="0.1.0" name="Feature Filter">
  <description>
    Filters feature results by different criteria.
  </description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio" />
  <expand macro="requires" />
  <command interpreter="python">
    openms_wrapper.py --executable 'FileFilter' --config $config
  </command>
  <configfiles>
    <configfile name="config">[simple_options]
in=$input1
in_type=featureXML
out=$output
out_type=featureXML
feature!q=${min_quality or ''}:${max_quality or ''}
</configfile>
  </configfiles>
  <inputs>
    <param name="input1" label="Input" type="data" format="featurexml" />
    <param name="min_quality" label="Minimum Quality" help="Leave empty to specify no minimum." value="" default="" type="float" />
    <param name="max_quality" label="Maximum Quality" help="Leave empty to specify no maximum." value="" default="" type="float" />
  </inputs>
  <outputs>
    <data format="featurexml" name="output" />
  </outputs>
  <help>
**What it does**

**Citation**

For the underlying tool, please cite ``Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008. OpenMS – an Open-Source Software Framework for Mass Spectrometry. BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.``

If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-openms
  </help>
</tool>