# OpenMS

If there is a tool that is part of OpenMS but not available here, let
John Chilton (jmchilton@gmail.com) and he will try to add it.

These tools require Galaxy to be equipped with common proteomic
datatypes. These can be obtained by installing Ira Cooke's ProtK via
the tool shed or merging the changesets from the following repository
into your Galaxy instance:

     https://bitbucket.org/galaxyp/galaxy-dist-proteomics

# Installing

These tools all require OpenMS (at least version 1.10) and may require
other dependencies (such as PepNovo for instance).

For Galaxy-P we are installing this tool via CloudBioLinux
(https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While
this fabric script may not be exactly appropriate for your environment
it may serve as a template for how to install this software.

# Obtaining Tools

Repositories for all Galaxy-P tools can be found at
https:/bitbucket.org/galaxyp/.

# Contact

Please send suggestions for improvements and bug reports to
jmchilton@gmail.com.

# License

All Galaxy-P tools are licensed under the Apache License Version 2.0
unless otherwise documented.

# Tool Versioning

Galaxy-P tools will have versions of the form X.Y.Z. Versions
differing only after the second decimal should be completely
compatible with each other. Breaking changes should result in an
increment of the number before and/or after the first decimal. All
tools of version less than 1.0.0 should be considered beta.