Mercurial > repos > galaxyp > openms
view high_res_precursosr_mass_corrector.xml @ 2:cf0d72c7b482 draft
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author | galaxyp |
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date | Fri, 10 May 2013 17:31:05 -0400 |
parents | ba86fd127f5a |
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<tool id="openms_high_res_precursor_mass_corrector" version="0.1" name="Precursor Mass Corrector (Hi Res)"> <description> precursor m/z correction on picked (centroided) high resolution data. </description> <macros> <import>macros.xml</import> </macros> <expand macro="stdio" /> <expand macro="requires" /> <configfiles> <configfile name="config">[simple_options] in=${input} out=${out} </configfile> </configfiles> <command interpreter="python"> openms_wrapper.py -executable 'HighResPrecursorMassCorrector' -config $config </command> <inputs> <param format="mzML" name="input" type="data" label="Input picked peak list"/> </inputs> <outputs> <data format="mzML" name="output" /> </outputs> <help> **What it does** This tool performs precursor mz correction on picked (=centroided) high resolution data. **Citation** For the underlying tool, please cite ``Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008. OpenMS – an Open-Source Software Framework for Mass Spectrometry. BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.`` If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-openms </help> </tool>