Mercurial > repos > galaxyp > openms_accuratemasssearch

comparison generate.sh @ 13:0056247c6934 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
author galaxyp
date Thu, 24 Sep 2020 12:27:21 +0000
parents 40e0709178a5
children 2dea459da18e
comparison
equal deleted inserted replaced
12:40e0709178a5 13:0056247c6934
65 if [[ "$?" -ne "0" ]]; then >&2 echo 'CTD -> XML conversion failed'; >&2 echo -e "stderr:\n$(cat convert.err)"; fi 65 if [[ "$?" -ne "0" ]]; then >&2 echo 'CTD -> XML conversion failed'; >&2 echo -e "stderr:\n$(cat convert.err)"; fi
66 conda deactivate 66 conda deactivate
67 67
68 patch PepNovoAdapter.xml < PepNovoAdapter.patch 68 patch PepNovoAdapter.xml < PepNovoAdapter.patch
69 patch OMSSAAdapter.xml < OMSSAAdapter.patch 69 patch OMSSAAdapter.xml < OMSSAAdapter.patch
70 patch -p0 <404-urls.patch
70 71
71 # #-b version log debug test in_type executable pepnovo_executable param_model_directory rt_concat_trafo_out param_id_pool 72 # #-b version log debug test in_type executable pepnovo_executable param_model_directory rt_concat_trafo_out param_id_pool
72 73
73 # for i in A-E F-H I-L M-N O-P Q-Z 74 # for i in A-E F-H I-L M-N O-P Q-Z
74 # do 75 # do