Mercurial > repos > galaxyp > openms_accuratemasssearch

comparison AccurateMassSearch.xml @ 14:2dea459da18e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:59:09 +0000
parents 40e0709178a5
children 532cf3ddcc91
comparison
equal deleted inserted replaced
13:0056247c6934 14:2dea459da18e
112 <section name="mzTab" title="" help="" expanded="false"> 112 <section name="mzTab" title="" help="" expanded="false">
113 <param name="exportIsotopeIntensities" argument="-algorithm:mzTab:exportIsotopeIntensities" type="boolean" truevalue="true" falsevalue="false" checked="false" label="[featureXML input only] Export column with available isotope trace intensities (opt_global_MTint)" help=""/> 113 <param name="exportIsotopeIntensities" argument="-algorithm:mzTab:exportIsotopeIntensities" type="boolean" truevalue="true" falsevalue="false" checked="false" label="[featureXML input only] Export column with available isotope trace intensities (opt_global_MTint)" help=""/>
114 </section> 114 </section>
115 </section> 115 </section>
116 <expand macro="adv_opts_macro"> 116 <expand macro="adv_opts_macro">
117 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 117 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
118 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 118 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
119 <expand macro="list_string_san"/> 119 <expand macro="list_string_san"/>
120 </param> 120 </param>
121 </expand> 121 </expand>
122 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 122 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
123 <option value="out_annotation_FLAG">out_annotation ([featureXML input only] Export column with available isotope trace intensities (opt_global_MTint))</option> 123 <option value="out_annotation_FLAG">out_annotation (A copy of the input file, annotated with matching hits from the database)</option>
124 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 124 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
125 </param> 125 </param>
126 </inputs> 126 </inputs>
127 <outputs> 127 <outputs>
128 <data name="out" label="${tool.name} on ${on_string}: out" format="mztab"/> 128 <data name="out" label="${tool.name} on ${on_string}: out" format="mztab"/>
138 <expand macro="manutest_AccurateMassSearch"/> 138 <expand macro="manutest_AccurateMassSearch"/>
139 </tests> 139 </tests>
140 <help><![CDATA[Match MS signals to molecules from a database by mass. 140 <help><![CDATA[Match MS signals to molecules from a database by mass.
141 141
142 142
143 For more information, visit http://www.openms.de/documentation/UTILS_AccurateMassSearch.html]]></help> 143 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_AccurateMassSearch.html]]></help>
144 <expand macro="references"/> 144 <expand macro="references"/>
145 </tool> 145 </tool>