Mercurial > repos > galaxyp > openms_accuratemasssearch

diff AccurateMassSearch.xml @ 11:96acf893530c draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:24:05 -0400
parents a7ef3b2f3621
children 40e0709178a5
line wrap: on
line diff
--- a/AccurateMassSearch.xml	Tue Mar 20 15:25:59 2018 -0400
+++ b/AccurateMassSearch.xml	Fri May 17 10:24:05 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>AccurateMassSearch
+  <command detect_errors="aggressive"><![CDATA[AccurateMassSearch
 
 #if $param_in:
   -in $param_in
@@ -68,7 +68,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="featurexml,consensusxml" optional="False" label="featureXML or consensusXML file" help="(-in) "/>
     <param name="param_positive_adducts" type="data" format="tabular" optional="False" value="CHEMISTRY/PositiveAdducts.tsv" label="This file contains the list of potential positive adducts that will be looked for in the database" help="(-positive_adducts) Edit the list if you wish to exclude/include adducts. By default CHEMISTRY/PositiveAdducts.tsv in OpenMS/share is used! If empty, the default will be used"/>
@@ -113,5 +113,5 @@
   <help>Match MS signals to molecules from a database by mass.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_AccurateMassSearch.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_AccurateMassSearch.html</help>
 </tool>