Mercurial > repos > galaxyp > openms_clustermasstraces

comparison ClusterMassTraces.xml @ 2:6d513a5aaa36 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:26:02 +0000
parents 8fad84d1a74d
children 10c41ad01df5
comparison
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1:377c3c7c058c 2:6d513a5aaa36
47 <param name="max_lag" argument="-max_lag" type="integer" optional="true" value="1" label="Maximal lag" help=""/> 47 <param name="max_lag" argument="-max_lag" type="integer" optional="true" value="1" label="Maximal lag" help=""/>
48 <param name="max_rt_apex_difference" argument="-max_rt_apex_difference" type="float" optional="true" value="5.0" label="Maximal difference of the apex in retention time" help=""/> 48 <param name="max_rt_apex_difference" argument="-max_rt_apex_difference" type="float" optional="true" value="5.0" label="Maximal difference of the apex in retention time" help=""/>
49 <param name="max_intensity_cutoff" argument="-max_intensity_cutoff" type="float" optional="true" value="0.0" label="Maximal intensity to be added to a spectrum" help=""/> 49 <param name="max_intensity_cutoff" argument="-max_intensity_cutoff" type="float" optional="true" value="0.0" label="Maximal intensity to be added to a spectrum" help=""/>
50 <param name="add_precursor" argument="-add_precursor" type="float" optional="true" value="0.0" label="Add a precursor mass" help=""/> 50 <param name="add_precursor" argument="-add_precursor" type="float" optional="true" value="0.0" label="Add a precursor mass" help=""/>
51 <expand macro="adv_opts_macro"> 51 <expand macro="adv_opts_macro">
52 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 52 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
53 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 53 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
54 <expand macro="list_string_san"/> 54 <expand macro="list_string_san"/>
55 </param> 55 </param>
56 </expand> 56 </expand>
57 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 57 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
58 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 58 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
59 </param> 59 </param>
60 </inputs> 60 </inputs>
61 <outputs> 61 <outputs>
62 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> 62 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>
67 <tests> 67 <tests>
68 <expand macro="autotest_ClusterMassTraces"/> 68 <expand macro="autotest_ClusterMassTraces"/>
69 <expand macro="manutest_ClusterMassTraces"/> 69 <expand macro="manutest_ClusterMassTraces"/>
70 </tests> 70 </tests>
71 <help><![CDATA[Creates pseudo spectra. 71 <help><![CDATA[Creates pseudo spectra.
72 ]]></help> 72
73
74 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_ClusterMassTraces.html]]></help>
73 <expand macro="references"/> 75 <expand macro="references"/>
74 </tool> 76 </tool>