Mercurial > repos > galaxyp > openms_clustermasstracesbyprecursor

comparison ClusterMassTracesByPrecursor.xml @ 2:f61e132c4536 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:10:26 +0000
parents e58e7a1ce396
children 75480fff2586
comparison
equal deleted inserted replaced
1:e58e7a1ce396 2:f61e132c4536
53 <param name="min_nr_ions" argument="-min_nr_ions" type="integer" optional="true" value="3" label="Minimal number of ions to report a spectrum" help=""/> 53 <param name="min_nr_ions" argument="-min_nr_ions" type="integer" optional="true" value="3" label="Minimal number of ions to report a spectrum" help=""/>
54 <param name="max_rt_apex_difference" argument="-max_rt_apex_difference" type="float" optional="true" value="5.0" label="Maximal difference of the apex in retention time (in seconds)" help="This is a hard parameter, all profiles further away will not be considered at all"/> 54 <param name="max_rt_apex_difference" argument="-max_rt_apex_difference" type="float" optional="true" value="5.0" label="Maximal difference of the apex in retention time (in seconds)" help="This is a hard parameter, all profiles further away will not be considered at all"/>
55 <param name="swath_lower" argument="-swath_lower" type="float" optional="true" value="0.0" label="Swath lower isolation window" help=""/> 55 <param name="swath_lower" argument="-swath_lower" type="float" optional="true" value="0.0" label="Swath lower isolation window" help=""/>
56 <param name="swath_upper" argument="-swath_upper" type="float" optional="true" value="0.0" label="Swath upper isolation window" help=""/> 56 <param name="swath_upper" argument="-swath_upper" type="float" optional="true" value="0.0" label="Swath upper isolation window" help=""/>
57 <expand macro="adv_opts_macro"> 57 <expand macro="adv_opts_macro">
58 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 58 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
59 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 59 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
60 <expand macro="list_string_san"/> 60 <expand macro="list_string_san"/>
61 </param> 61 </param>
62 </expand> 62 </expand>
63 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 63 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
64 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 64 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
65 </param> 65 </param>
66 </inputs> 66 </inputs>
67 <outputs> 67 <outputs>
68 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> 68 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>
73 <tests> 73 <tests>
74 <expand macro="autotest_ClusterMassTracesByPrecursor"/> 74 <expand macro="autotest_ClusterMassTracesByPrecursor"/>
75 <expand macro="manutest_ClusterMassTracesByPrecursor"/> 75 <expand macro="manutest_ClusterMassTracesByPrecursor"/>
76 </tests> 76 </tests>
77 <help><![CDATA[Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile. 77 <help><![CDATA[Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile.
78 ]]></help> 78
79
80 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_ClusterMassTracesByPrecursor.html]]></help>
79 <expand macro="references"/> 81 <expand macro="references"/>
80 </tool> 82 </tool>