Mercurial > repos > galaxyp > openms_consensusid

comparison ConsensusID.xml @ 1:66388c2e2f38 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
author galaxyp
date Tue, 18 Apr 2017 15:59:22 -0400
parents 5c56387ff06a
children 9d7e3e5da94a
comparison
equal deleted inserted replaced
0:5c56387ff06a 1:66388c2e2f38
23 #end if 23 #end if
24 #if $param_mz_delta: 24 #if $param_mz_delta:
25 -mz_delta $param_mz_delta 25 -mz_delta $param_mz_delta
26 #end if 26 #end if
27 #if $param_algorithm: 27 #if $param_algorithm:
28 -algorithm $param_algorithm 28 -algorithm
29 #if " " in str($param_algorithm):
30 "$param_algorithm"
31 #else
32 $param_algorithm
33 #end if
29 #end if 34 #end if
30 #if $param_filter_considered_hits: 35 #if $param_filter_considered_hits:
31 -filter:considered_hits $param_filter_considered_hits 36 -filter:considered_hits $param_filter_considered_hits
32 #end if 37 #end if
33 #if $param_filter_min_support: 38 #if $param_filter_min_support:
41 #end if 46 #end if
42 #if $param_PEPIons_min_shared: 47 #if $param_PEPIons_min_shared:
43 -PEPIons:min_shared $param_PEPIons_min_shared 48 -PEPIons:min_shared $param_PEPIons_min_shared
44 #end if 49 #end if
45 #if $param_PEPMatrix_matrix: 50 #if $param_PEPMatrix_matrix:
46 -PEPMatrix:matrix $param_PEPMatrix_matrix 51 -PEPMatrix:matrix
52 #if " " in str($param_PEPMatrix_matrix):
53 "$param_PEPMatrix_matrix"
54 #else
55 $param_PEPMatrix_matrix
56 #end if
47 #end if 57 #end if
48 #if $param_PEPMatrix_penalty: 58 #if $param_PEPMatrix_penalty:
49 -PEPMatrix:penalty $param_PEPMatrix_penalty 59 -PEPMatrix:penalty $param_PEPMatrix_penalty
50 #end if 60 #end if
51 #if $adv_opts.adv_opts_selector=='advanced': 61 #if $adv_opts.adv_opts_selector=='advanced':