Mercurial > repos > galaxyp > openms_consensusid

comparison macros.xml @ 17:abffdfee3021 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms"
author galaxyp
date Mon, 22 Feb 2021 10:46:10 +0000
parents 01dbaf6a57e0
children f4be248c3d47
comparison
equal deleted inserted replaced
16:01dbaf6a57e0 17:abffdfee3021
19 </requirements> 19 </requirements>
20 </xml> 20 </xml>
21 <xml name="stdio"> 21 <xml name="stdio">
22 <stdio> 22 <stdio>
23 <regex match="std::bad_alloc" level="fatal_oom" description="Could not allocate memory"/> 23 <regex match="std::bad_alloc" level="fatal_oom" description="Could not allocate memory"/>
24 <regex match="OutOfMemoryError" level="fatal_oom" description="Could not allocate memory"/>
24 <regex match="Could not allocate metaspace" level="fatal_oom" description="Java memory Exception"/> 25 <regex match="Could not allocate metaspace" level="fatal_oom" description="Java memory Exception"/>
25 <regex match="Cannot create VM thread" level="fatal_oom" description="Java memory Exception"/> 26 <regex match="Cannot create VM thread" level="fatal_oom" description="Java memory Exception"/>
26 <regex match="qUncompress: could not allocate enough memory to uncompress data" level="fatal_oom" description="Java memory Exception"/> 27 <regex match="qUncompress: could not allocate enough memory to uncompress data" level="fatal_oom" description="Java memory Exception"/>
27 </stdio> 28 </stdio>
28 </xml> 29 </xml>
43 </when> 44 </when>
44 </conditional> 45 </conditional>
45 </xml> 46 </xml>
46 47
47 <!-- sanitizers and validators --> 48 <!-- sanitizers and validators -->
48 <xml name="list_string_val"> 49 <xml name="list_string_val" token_name="">
49 <validator type="regex" message="parameter must not start with $">^[^$]</validator> 50 <validator type="regex" message="parameter @NAME@: must not start with $">^[^$]</validator>
50 51
51 <validator type="regex" message="a space separated list of string is needed (strings that contain spaces can be quoted with &quot;)">^ *((?:\"[^\"]*\" +)|(?:[^ \"]+ +))*((?:\"[^\"]*\")|(?:[^ \"]+)) *$</validator> 52 <validator type="regex" message="parameter @NAME@: a space separated list of string is needed (strings that contain spaces can be quoted with &quot;)">^ *((?:\"[^\"]*\" +)|(?:[^ \"]+ +))*((?:\"[^\"]*\")|(?:[^ \"]+)) *$</validator>
52 </xml> 53 </xml>
53 <xml name="list_string_san"> 54 <xml name="list_string_san">
54 <sanitizer> 55 <sanitizer>
55 <valid initial="string.printable"> 56 <valid initial="string.printable">
56 <!-- <remove value="'"/>--> 57 <!-- <remove value="'"/>-->
62 <!--<remove value=";"/>--> 63 <!--<remove value=";"/>-->
63 <!-- <remove value="#"/>--> 64 <!-- <remove value="#"/>-->
64 </valid> 65 </valid>
65 </sanitizer> 66 </sanitizer>
66 </xml> 67 </xml>
67 <xml name="list_float_valsan"> 68 <xml name="list_float_valsan" token_name="">
68 <validator type="regex" message="a space separated list of float values is required">^ *[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?( *[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?)* *$</validator> 69 <validator type="regex" message="parameter @NAME@: a space separated list of float values is required">^ *[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?( *[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?)* *$</validator>
69 <yield/> 70 <yield/>
70 <sanitizer> 71 <sanitizer>
71 <valid initial="string.digits"> 72 <valid initial="string.digits">
72 <add value=" "/> 73 <add value=" "/>
73 <add value="."/> 74 <add value="."/>
76 <add value="+"/> 77 <add value="+"/>
77 <add value="-"/> 78 <add value="-"/>
78 </valid> 79 </valid>
79 </sanitizer> 80 </sanitizer>
80 </xml> 81 </xml>
81 <xml name="list_integer_valsan"> 82 <xml name="list_integer_valsan" token_name="">
82 <validator type="regex" message="a space separated list of integer values is required">^ *[+-]?[0-9]+( *[+-]?[0-9]+)* *$</validator> 83 <validator type="regex" message="parameter @NAME@: a space separated list of integer values is required">^ *[+-]?[0-9]+( *[+-]?[0-9]+)* *$</validator>
83 <yield/> 84 <yield/>
84 <sanitizer> 85 <sanitizer>
85 <valid initial="string.digits"> 86 <valid initial="string.digits">
86 <add value=" "/> 87 <add value=" "/>
87 <add value="+"/> 88 <add value="+"/>