Mercurial > repos > galaxyp > openms_consensusid
comparison macros_autotest.xml @ 17:abffdfee3021 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms"
| author | galaxyp |
|---|---|
| date | Mon, 22 Feb 2021 10:46:10 +0000 |
| parents | feebe2054e40 |
| children |
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| 16:01dbaf6a57e0 | 17:abffdfee3021 |
|---|---|
| 124 <param name="use_known_unknowns" value="false"/> | 124 <param name="use_known_unknowns" value="false"/> |
| 125 <param name="min_transitions" value="1"/> | 125 <param name="min_transitions" value="1"/> |
| 126 <param name="max_transitions" value="3"/> | 126 <param name="max_transitions" value="3"/> |
| 127 <param name="cosine_similarity_threshold" value="0.98"/> | 127 <param name="cosine_similarity_threshold" value="0.98"/> |
| 128 <param name="transition_threshold" value="5.0"/> | 128 <param name="transition_threshold" value="5.0"/> |
| 129 <param name="out_workspace_directory" value=""/> | |
| 130 <section name="deisotoping"> | 129 <section name="deisotoping"> |
| 131 <param name="use_deisotoper" value="false"/> | 130 <param name="use_deisotoper" value="false"/> |
| 132 <param name="fragment_tolerance" value="1.0"/> | 131 <param name="fragment_tolerance" value="1.0"/> |
| 133 <param name="fragment_unit" value="ppm"/> | 132 <param name="fragment_unit" value="ppm"/> |
| 134 <param name="min_charge" value="1"/> | 133 <param name="min_charge" value="1"/> |
| 193 <param name="use_known_unknowns" value="false"/> | 192 <param name="use_known_unknowns" value="false"/> |
| 194 <param name="min_transitions" value="1"/> | 193 <param name="min_transitions" value="1"/> |
| 195 <param name="max_transitions" value="3"/> | 194 <param name="max_transitions" value="3"/> |
| 196 <param name="cosine_similarity_threshold" value="0.98"/> | 195 <param name="cosine_similarity_threshold" value="0.98"/> |
| 197 <param name="transition_threshold" value="5.0"/> | 196 <param name="transition_threshold" value="5.0"/> |
| 198 <param name="out_workspace_directory" value=""/> | |
| 199 <section name="deisotoping"> | 197 <section name="deisotoping"> |
| 200 <param name="use_deisotoper" value="false"/> | 198 <param name="use_deisotoper" value="false"/> |
| 201 <param name="fragment_tolerance" value="1.0"/> | 199 <param name="fragment_tolerance" value="1.0"/> |
| 202 <param name="fragment_unit" value="ppm"/> | 200 <param name="fragment_unit" value="ppm"/> |
| 203 <param name="min_charge" value="1"/> | 201 <param name="min_charge" value="1"/> |
| 262 <param name="use_known_unknowns" value="false"/> | 260 <param name="use_known_unknowns" value="false"/> |
| 263 <param name="min_transitions" value="1"/> | 261 <param name="min_transitions" value="1"/> |
| 264 <param name="max_transitions" value="3"/> | 262 <param name="max_transitions" value="3"/> |
| 265 <param name="cosine_similarity_threshold" value="0.98"/> | 263 <param name="cosine_similarity_threshold" value="0.98"/> |
| 266 <param name="transition_threshold" value="5.0"/> | 264 <param name="transition_threshold" value="5.0"/> |
| 267 <param name="out_workspace_directory" value=""/> | |
| 268 <section name="deisotoping"> | 265 <section name="deisotoping"> |
| 269 <param name="use_deisotoper" value="false"/> | 266 <param name="use_deisotoper" value="false"/> |
| 270 <param name="fragment_tolerance" value="1.0"/> | 267 <param name="fragment_tolerance" value="1.0"/> |
| 271 <param name="fragment_unit" value="ppm"/> | 268 <param name="fragment_unit" value="ppm"/> |
| 272 <param name="min_charge" value="1"/> | 269 <param name="min_charge" value="1"/> |
| 331 <param name="use_known_unknowns" value="false"/> | 328 <param name="use_known_unknowns" value="false"/> |
| 332 <param name="min_transitions" value="1"/> | 329 <param name="min_transitions" value="1"/> |
| 333 <param name="max_transitions" value="3"/> | 330 <param name="max_transitions" value="3"/> |
| 334 <param name="cosine_similarity_threshold" value="0.98"/> | 331 <param name="cosine_similarity_threshold" value="0.98"/> |
| 335 <param name="transition_threshold" value="5.0"/> | 332 <param name="transition_threshold" value="5.0"/> |
| 336 <param name="out_workspace_directory" value=""/> | |
| 337 <section name="deisotoping"> | 333 <section name="deisotoping"> |
| 338 <param name="use_deisotoper" value="false"/> | 334 <param name="use_deisotoper" value="false"/> |
| 339 <param name="fragment_tolerance" value="1.0"/> | 335 <param name="fragment_tolerance" value="1.0"/> |
| 340 <param name="fragment_unit" value="ppm"/> | 336 <param name="fragment_unit" value="ppm"/> |
| 341 <param name="min_charge" value="1"/> | 337 <param name="min_charge" value="1"/> |
| 400 <param name="use_known_unknowns" value="true"/> | 396 <param name="use_known_unknowns" value="true"/> |
| 401 <param name="min_transitions" value="1"/> | 397 <param name="min_transitions" value="1"/> |
| 402 <param name="max_transitions" value="3"/> | 398 <param name="max_transitions" value="3"/> |
| 403 <param name="cosine_similarity_threshold" value="0.98"/> | 399 <param name="cosine_similarity_threshold" value="0.98"/> |
| 404 <param name="transition_threshold" value="5.0"/> | 400 <param name="transition_threshold" value="5.0"/> |
| 405 <param name="out_workspace_directory" value=""/> | |
| 406 <section name="deisotoping"> | 401 <section name="deisotoping"> |
| 407 <param name="use_deisotoper" value="false"/> | 402 <param name="use_deisotoper" value="false"/> |
| 408 <param name="fragment_tolerance" value="1.0"/> | 403 <param name="fragment_tolerance" value="1.0"/> |
| 409 <param name="fragment_unit" value="ppm"/> | 404 <param name="fragment_unit" value="ppm"/> |
| 410 <param name="min_charge" value="1"/> | 405 <param name="min_charge" value="1"/> |
| 469 <param name="use_known_unknowns" value="false"/> | 464 <param name="use_known_unknowns" value="false"/> |
| 470 <param name="min_transitions" value="2"/> | 465 <param name="min_transitions" value="2"/> |
| 471 <param name="max_transitions" value="3"/> | 466 <param name="max_transitions" value="3"/> |
| 472 <param name="cosine_similarity_threshold" value="0.98"/> | 467 <param name="cosine_similarity_threshold" value="0.98"/> |
| 473 <param name="transition_threshold" value="3.0"/> | 468 <param name="transition_threshold" value="3.0"/> |
| 474 <param name="out_workspace_directory" value=""/> | |
| 475 <section name="deisotoping"> | 469 <section name="deisotoping"> |
| 476 <param name="use_deisotoper" value="false"/> | 470 <param name="use_deisotoper" value="false"/> |
| 477 <param name="fragment_tolerance" value="1.0"/> | 471 <param name="fragment_tolerance" value="1.0"/> |
| 478 <param name="fragment_unit" value="ppm"/> | 472 <param name="fragment_unit" value="ppm"/> |
| 479 <param name="min_charge" value="1"/> | 473 <param name="min_charge" value="1"/> |
| 538 <param name="use_known_unknowns" value="true"/> | 532 <param name="use_known_unknowns" value="true"/> |
| 539 <param name="min_transitions" value="2"/> | 533 <param name="min_transitions" value="2"/> |
| 540 <param name="max_transitions" value="3"/> | 534 <param name="max_transitions" value="3"/> |
| 541 <param name="cosine_similarity_threshold" value="0.98"/> | 535 <param name="cosine_similarity_threshold" value="0.98"/> |
| 542 <param name="transition_threshold" value="3.0"/> | 536 <param name="transition_threshold" value="3.0"/> |
| 543 <param name="out_workspace_directory" value=""/> | |
| 544 <section name="deisotoping"> | 537 <section name="deisotoping"> |
| 545 <param name="use_deisotoper" value="false"/> | 538 <param name="use_deisotoper" value="false"/> |
| 546 <param name="fragment_tolerance" value="1.0"/> | 539 <param name="fragment_tolerance" value="1.0"/> |
| 547 <param name="fragment_unit" value="ppm"/> | 540 <param name="fragment_unit" value="ppm"/> |
| 548 <param name="min_charge" value="1"/> | 541 <param name="min_charge" value="1"/> |
| 607 <param name="use_known_unknowns" value="false"/> | 600 <param name="use_known_unknowns" value="false"/> |
| 608 <param name="min_transitions" value="2"/> | 601 <param name="min_transitions" value="2"/> |
| 609 <param name="max_transitions" value="3"/> | 602 <param name="max_transitions" value="3"/> |
| 610 <param name="cosine_similarity_threshold" value="0.98"/> | 603 <param name="cosine_similarity_threshold" value="0.98"/> |
| 611 <param name="transition_threshold" value="3.0"/> | 604 <param name="transition_threshold" value="3.0"/> |
| 612 <param name="out_workspace_directory" value=""/> | |
| 613 <section name="deisotoping"> | 605 <section name="deisotoping"> |
| 614 <param name="use_deisotoper" value="false"/> | 606 <param name="use_deisotoper" value="false"/> |
| 615 <param name="fragment_tolerance" value="1.0"/> | 607 <param name="fragment_tolerance" value="1.0"/> |
| 616 <param name="fragment_unit" value="ppm"/> | 608 <param name="fragment_unit" value="ppm"/> |
| 617 <param name="min_charge" value="1"/> | 609 <param name="min_charge" value="1"/> |
| 676 <param name="use_known_unknowns" value="false"/> | 668 <param name="use_known_unknowns" value="false"/> |
| 677 <param name="min_transitions" value="2"/> | 669 <param name="min_transitions" value="2"/> |
| 678 <param name="max_transitions" value="3"/> | 670 <param name="max_transitions" value="3"/> |
| 679 <param name="cosine_similarity_threshold" value="0.98"/> | 671 <param name="cosine_similarity_threshold" value="0.98"/> |
| 680 <param name="transition_threshold" value="3.0"/> | 672 <param name="transition_threshold" value="3.0"/> |
| 681 <param name="out_workspace_directory" value=""/> | |
| 682 <section name="deisotoping"> | 673 <section name="deisotoping"> |
| 683 <param name="use_deisotoper" value="false"/> | 674 <param name="use_deisotoper" value="false"/> |
| 684 <param name="fragment_tolerance" value="1.0"/> | 675 <param name="fragment_tolerance" value="1.0"/> |
| 685 <param name="fragment_unit" value="ppm"/> | 676 <param name="fragment_unit" value="ppm"/> |
| 686 <param name="min_charge" value="1"/> | 677 <param name="min_charge" value="1"/> |
| 756 <param name="use_C_ions" value="false"/> | 747 <param name="use_C_ions" value="false"/> |
| 757 <param name="use_X_ions" value="false"/> | 748 <param name="use_X_ions" value="false"/> |
| 758 <param name="use_Y_ions" value="true"/> | 749 <param name="use_Y_ions" value="true"/> |
| 759 <param name="use_Z_ions" value="false"/> | 750 <param name="use_Z_ions" value="false"/> |
| 760 <param name="use_NL_ions" value="false"/> | 751 <param name="use_NL_ions" value="false"/> |
| 761 <param name="second_enzyme" value=""/> | |
| 762 <param name="digest_mass_range" value="600:5000"/> | 752 <param name="digest_mass_range" value="600:5000"/> |
| 763 <param name="max_precursor_charge" value="5"/> | 753 <param name="max_precursor_charge" value="5"/> |
| 764 <param name="spectrum_batch_size" value="1000"/> | 754 <param name="spectrum_batch_size" value="1000"/> |
| 765 <param name="mass_offsets" value="0.0"/> | 755 <param name="mass_offsets" value="0.0"/> |
| 766 <param name="minimum_peaks" value="10"/> | 756 <param name="minimum_peaks" value="10"/> |
| 794 <param name="override_charge" value="keep any known"/> | 784 <param name="override_charge" value="keep any known"/> |
| 795 <param name="ms_level" value="2"/> | 785 <param name="ms_level" value="2"/> |
| 796 <param name="activation_method" value="ALL"/> | 786 <param name="activation_method" value="ALL"/> |
| 797 <param name="max_fragment_charge" value="3"/> | 787 <param name="max_fragment_charge" value="3"/> |
| 798 <param name="clip_nterm_methionine" value="false"/> | 788 <param name="clip_nterm_methionine" value="false"/> |
| 799 <param name="fixed_modifications" value=""/> | 789 <param name="fixed_modifications" value="Carbamidomethyl (C)"/> |
| 800 <param name="variable_modifications" value=""/> | 790 <param name="variable_modifications" value="Oxidation (M)"/> |
| 801 <param name="binary_modifications" value=""/> | 791 <param name="binary_modifications" value=""/> |
| 802 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG,pin_out_FLAG"/> | 792 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG,pin_out_FLAG"/> |
| 803 <output name="ctd_out" ftype="xml"> | 793 <output name="ctd_out" ftype="xml"> |
| 804 <assert_contents> | 794 <assert_contents> |
| 805 <is_valid_xml/> | 795 <is_valid_xml/> |
| 814 <param name="use_C_ions" value="false"/> | 804 <param name="use_C_ions" value="false"/> |
| 815 <param name="use_X_ions" value="false"/> | 805 <param name="use_X_ions" value="false"/> |
| 816 <param name="use_Y_ions" value="true"/> | 806 <param name="use_Y_ions" value="true"/> |
| 817 <param name="use_Z_ions" value="false"/> | 807 <param name="use_Z_ions" value="false"/> |
| 818 <param name="use_NL_ions" value="false"/> | 808 <param name="use_NL_ions" value="false"/> |
| 819 <param name="second_enzyme" value=""/> | |
| 820 <param name="digest_mass_range" value="600:5000"/> | 809 <param name="digest_mass_range" value="600:5000"/> |
| 821 <param name="max_precursor_charge" value="5"/> | 810 <param name="max_precursor_charge" value="5"/> |
| 822 <param name="spectrum_batch_size" value="1000"/> | 811 <param name="spectrum_batch_size" value="1000"/> |
| 823 <param name="mass_offsets" value="0.0"/> | 812 <param name="mass_offsets" value="0.0"/> |
| 824 <param name="minimum_peaks" value="10"/> | 813 <param name="minimum_peaks" value="10"/> |
| 852 <param name="override_charge" value="keep any known"/> | 841 <param name="override_charge" value="keep any known"/> |
| 853 <param name="ms_level" value="2"/> | 842 <param name="ms_level" value="2"/> |
| 854 <param name="activation_method" value="ALL"/> | 843 <param name="activation_method" value="ALL"/> |
| 855 <param name="max_fragment_charge" value="3"/> | 844 <param name="max_fragment_charge" value="3"/> |
| 856 <param name="clip_nterm_methionine" value="false"/> | 845 <param name="clip_nterm_methionine" value="false"/> |
| 857 <param name="fixed_modifications" value=""/> | 846 <param name="fixed_modifications" value="Carbamidomethyl (C)"/> |
| 858 <param name="variable_modifications" value=""/> | 847 <param name="variable_modifications" value="Oxidation (M)"/> |
| 859 <param name="binary_modifications" value=""/> | 848 <param name="binary_modifications" value=""/> |
| 860 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG,pin_out_FLAG"/> | 849 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG,pin_out_FLAG"/> |
| 861 <output name="ctd_out" ftype="xml"> | 850 <output name="ctd_out" ftype="xml"> |
| 862 <assert_contents> | 851 <assert_contents> |
| 863 <is_valid_xml/> | 852 <is_valid_xml/> |
| 872 <param name="use_C_ions" value="false"/> | 861 <param name="use_C_ions" value="false"/> |
| 873 <param name="use_X_ions" value="false"/> | 862 <param name="use_X_ions" value="false"/> |
| 874 <param name="use_Y_ions" value="true"/> | 863 <param name="use_Y_ions" value="true"/> |
| 875 <param name="use_Z_ions" value="false"/> | 864 <param name="use_Z_ions" value="false"/> |
| 876 <param name="use_NL_ions" value="false"/> | 865 <param name="use_NL_ions" value="false"/> |
| 877 <param name="second_enzyme" value=""/> | |
| 878 <param name="digest_mass_range" value="600:5000"/> | 866 <param name="digest_mass_range" value="600:5000"/> |
| 879 <param name="max_precursor_charge" value="5"/> | 867 <param name="max_precursor_charge" value="5"/> |
| 880 <param name="spectrum_batch_size" value="20000"/> | 868 <param name="spectrum_batch_size" value="20000"/> |
| 881 <param name="mass_offsets" value="0.0"/> | 869 <param name="mass_offsets" value="0.0"/> |
| 882 <param name="minimum_peaks" value="10"/> | 870 <param name="minimum_peaks" value="10"/> |
| 930 <param name="use_C_ions" value="false"/> | 918 <param name="use_C_ions" value="false"/> |
| 931 <param name="use_X_ions" value="false"/> | 919 <param name="use_X_ions" value="false"/> |
| 932 <param name="use_Y_ions" value="true"/> | 920 <param name="use_Y_ions" value="true"/> |
| 933 <param name="use_Z_ions" value="false"/> | 921 <param name="use_Z_ions" value="false"/> |
| 934 <param name="use_NL_ions" value="false"/> | 922 <param name="use_NL_ions" value="false"/> |
| 935 <param name="second_enzyme" value=""/> | |
| 936 <param name="digest_mass_range" value="600:1200"/> | 923 <param name="digest_mass_range" value="600:1200"/> |
| 937 <param name="max_precursor_charge" value="5"/> | 924 <param name="max_precursor_charge" value="5"/> |
| 938 <param name="spectrum_batch_size" value="20000"/> | 925 <param name="spectrum_batch_size" value="20000"/> |
| 939 <param name="mass_offsets" value="0.0"/> | 926 <param name="mass_offsets" value="0.0"/> |
| 940 <param name="minimum_peaks" value="10"/> | 927 <param name="minimum_peaks" value="10"/> |
| 1005 <param name="max_isotope" value="3"/> | 992 <param name="max_isotope" value="3"/> |
| 1006 <param name="missed_cleavages" value="1"/> | 993 <param name="missed_cleavages" value="1"/> |
| 1007 <param name="number_of_hits" value="1"/> | 994 <param name="number_of_hits" value="1"/> |
| 1008 <param name="estimate_precursor_mz" value="true"/> | 995 <param name="estimate_precursor_mz" value="true"/> |
| 1009 <param name="number_of_prescoring_hits" value="250"/> | 996 <param name="number_of_prescoring_hits" value="250"/> |
| 1010 <param name="fixed_modifications" value=""/> | |
| 1011 <param name="variable_modifications" value=""/> | |
| 1012 <param name="residue_set" value="Natural19WithoutI"/> | 997 <param name="residue_set" value="Natural19WithoutI"/> |
| 1013 </section> | 998 </section> |
| 1014 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> | 999 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> |
| 1015 <output name="ctd_out" ftype="xml"> | 1000 <output name="ctd_out" ftype="xml"> |
| 1016 <assert_contents> | 1001 <assert_contents> |
| 1044 <param name="max_isotope" value="3"/> | 1029 <param name="max_isotope" value="3"/> |
| 1045 <param name="missed_cleavages" value="1"/> | 1030 <param name="missed_cleavages" value="1"/> |
| 1046 <param name="number_of_hits" value="1"/> | 1031 <param name="number_of_hits" value="1"/> |
| 1047 <param name="estimate_precursor_mz" value="true"/> | 1032 <param name="estimate_precursor_mz" value="true"/> |
| 1048 <param name="number_of_prescoring_hits" value="250"/> | 1033 <param name="number_of_prescoring_hits" value="250"/> |
| 1049 <param name="fixed_modifications" value=""/> | |
| 1050 <param name="variable_modifications" value=""/> | |
| 1051 <param name="residue_set" value="Natural19WithoutI"/> | 1034 <param name="residue_set" value="Natural19WithoutI"/> |
| 1052 </section> | 1035 </section> |
| 1053 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> | 1036 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> |
| 1054 <output name="ctd_out" ftype="xml"> | 1037 <output name="ctd_out" ftype="xml"> |
| 1055 <assert_contents> | 1038 <assert_contents> |
| 4183 <xml name="autotest_FidoAdapter"> | 4166 <xml name="autotest_FidoAdapter"> |
| 4184 <test expect_num_outputs="2"> | 4167 <test expect_num_outputs="2"> |
| 4185 <conditional name="adv_opts_cond"> | 4168 <conditional name="adv_opts_cond"> |
| 4186 <param name="adv_opts_selector" value="advanced"/> | 4169 <param name="adv_opts_selector" value="advanced"/> |
| 4187 <param name="keep_zero_group" value="false"/> | 4170 <param name="keep_zero_group" value="false"/> |
| 4188 <param name="accuracy" value=""/> | |
| 4189 <param name="log2_states_precalc" value="0"/> | 4171 <param name="log2_states_precalc" value="0"/> |
| 4190 <param name="force" value="false"/> | 4172 <param name="force" value="false"/> |
| 4191 <param name="test" value="true"/> | 4173 <param name="test" value="true"/> |
| 4192 </conditional> | 4174 </conditional> |
| 4193 <param name="in" value="FidoAdapter_1_input.idXML"/> | 4175 <param name="in" value="FidoAdapter_1_input.idXML"/> |
| 4212 </test> | 4194 </test> |
| 4213 <test expect_num_outputs="2"> | 4195 <test expect_num_outputs="2"> |
| 4214 <conditional name="adv_opts_cond"> | 4196 <conditional name="adv_opts_cond"> |
| 4215 <param name="adv_opts_selector" value="advanced"/> | 4197 <param name="adv_opts_selector" value="advanced"/> |
| 4216 <param name="keep_zero_group" value="false"/> | 4198 <param name="keep_zero_group" value="false"/> |
| 4217 <param name="accuracy" value=""/> | |
| 4218 <param name="log2_states_precalc" value="0"/> | 4199 <param name="log2_states_precalc" value="0"/> |
| 4219 <param name="force" value="false"/> | 4200 <param name="force" value="false"/> |
| 4220 <param name="test" value="true"/> | 4201 <param name="test" value="true"/> |
| 4221 </conditional> | 4202 </conditional> |
| 4222 <param name="in" value="FidoAdapter_1_input.idXML"/> | 4203 <param name="in" value="FidoAdapter_1_input.idXML"/> |
| 4241 </test> | 4222 </test> |
| 4242 <test expect_num_outputs="2"> | 4223 <test expect_num_outputs="2"> |
| 4243 <conditional name="adv_opts_cond"> | 4224 <conditional name="adv_opts_cond"> |
| 4244 <param name="adv_opts_selector" value="advanced"/> | 4225 <param name="adv_opts_selector" value="advanced"/> |
| 4245 <param name="keep_zero_group" value="false"/> | 4226 <param name="keep_zero_group" value="false"/> |
| 4246 <param name="accuracy" value=""/> | |
| 4247 <param name="log2_states_precalc" value="0"/> | 4227 <param name="log2_states_precalc" value="0"/> |
| 4248 <param name="force" value="false"/> | 4228 <param name="force" value="false"/> |
| 4249 <param name="test" value="true"/> | 4229 <param name="test" value="true"/> |
| 4250 </conditional> | 4230 </conditional> |
| 4251 <param name="in" value="FidoAdapter_1_input.idXML"/> | 4231 <param name="in" value="FidoAdapter_1_input.idXML"/> |
| 4270 </test> | 4250 </test> |
| 4271 <test expect_num_outputs="2"> | 4251 <test expect_num_outputs="2"> |
| 4272 <conditional name="adv_opts_cond"> | 4252 <conditional name="adv_opts_cond"> |
| 4273 <param name="adv_opts_selector" value="advanced"/> | 4253 <param name="adv_opts_selector" value="advanced"/> |
| 4274 <param name="keep_zero_group" value="false"/> | 4254 <param name="keep_zero_group" value="false"/> |
| 4275 <param name="accuracy" value=""/> | |
| 4276 <param name="log2_states_precalc" value="0"/> | 4255 <param name="log2_states_precalc" value="0"/> |
| 4277 <param name="force" value="false"/> | 4256 <param name="force" value="false"/> |
| 4278 <param name="test" value="true"/> | 4257 <param name="test" value="true"/> |
| 4279 </conditional> | 4258 </conditional> |
| 4280 <param name="in" value="FidoAdapter_4_input.idXML"/> | 4259 <param name="in" value="FidoAdapter_4_input.idXML"/> |
| 4299 </test> | 4278 </test> |
| 4300 <test expect_num_outputs="2"> | 4279 <test expect_num_outputs="2"> |
| 4301 <conditional name="adv_opts_cond"> | 4280 <conditional name="adv_opts_cond"> |
| 4302 <param name="adv_opts_selector" value="advanced"/> | 4281 <param name="adv_opts_selector" value="advanced"/> |
| 4303 <param name="keep_zero_group" value="false"/> | 4282 <param name="keep_zero_group" value="false"/> |
| 4304 <param name="accuracy" value=""/> | |
| 4305 <param name="log2_states_precalc" value="0"/> | 4283 <param name="log2_states_precalc" value="0"/> |
| 4306 <param name="force" value="false"/> | 4284 <param name="force" value="false"/> |
| 4307 <param name="test" value="true"/> | 4285 <param name="test" value="true"/> |
| 4308 </conditional> | 4286 </conditional> |
| 4309 <param name="in" value="FidoAdapter_5_input.idXML"/> | 4287 <param name="in" value="FidoAdapter_5_input.idXML"/> |
| 4328 </test> | 4306 </test> |
| 4329 <test expect_num_outputs="2"> | 4307 <test expect_num_outputs="2"> |
| 4330 <conditional name="adv_opts_cond"> | 4308 <conditional name="adv_opts_cond"> |
| 4331 <param name="adv_opts_selector" value="advanced"/> | 4309 <param name="adv_opts_selector" value="advanced"/> |
| 4332 <param name="keep_zero_group" value="false"/> | 4310 <param name="keep_zero_group" value="false"/> |
| 4333 <param name="accuracy" value=""/> | |
| 4334 <param name="log2_states_precalc" value="0"/> | 4311 <param name="log2_states_precalc" value="0"/> |
| 4335 <param name="force" value="false"/> | 4312 <param name="force" value="false"/> |
| 4336 <param name="test" value="true"/> | 4313 <param name="test" value="true"/> |
| 4337 </conditional> | 4314 </conditional> |
| 4338 <param name="in" value="FidoAdapter_1_input.idXML"/> | 4315 <param name="in" value="FidoAdapter_1_input.idXML"/> |
| 5345 <param name="float_da" value="none"/> | 5322 <param name="float_da" value="none"/> |
| 5346 </section> | 5323 </section> |
| 5347 </section> | 5324 </section> |
| 5348 <section name="spectra"> | 5325 <section name="spectra"> |
| 5349 <param name="remove_zoom" value="false"/> | 5326 <param name="remove_zoom" value="false"/> |
| 5350 <param name="remove_mode" value=""/> | |
| 5351 <param name="remove_activation" value=""/> | |
| 5352 <param name="remove_collision_energy" value=":"/> | 5327 <param name="remove_collision_energy" value=":"/> |
| 5353 <param name="remove_isolation_window_width" value=":"/> | 5328 <param name="remove_isolation_window_width" value=":"/> |
| 5354 <param name="select_zoom" value="false"/> | 5329 <param name="select_zoom" value="false"/> |
| 5355 <param name="select_mode" value=""/> | |
| 5356 <param name="select_activation" value=""/> | |
| 5357 <param name="select_collision_energy" value=":"/> | 5330 <param name="select_collision_energy" value=":"/> |
| 5358 <param name="select_isolation_window_width" value=":"/> | 5331 <param name="select_isolation_window_width" value=":"/> |
| 5359 <param name="select_polarity" value=""/> | |
| 5360 <section name="blackorwhitelist"> | 5332 <section name="blackorwhitelist"> |
| 5361 <param name="similarity_threshold" value="-1.0"/> | 5333 <param name="similarity_threshold" value="-1.0"/> |
| 5362 <param name="rt" value="0.01"/> | 5334 <param name="rt" value="0.01"/> |
| 5363 <param name="mz" value="0.01"/> | 5335 <param name="mz" value="0.01"/> |
| 5364 <param name="use_ppm_tolerance" value="false"/> | 5336 <param name="use_ppm_tolerance" value="false"/> |
| 5451 <param name="float_da" value="none"/> | 5423 <param name="float_da" value="none"/> |
| 5452 </section> | 5424 </section> |
| 5453 </section> | 5425 </section> |
| 5454 <section name="spectra"> | 5426 <section name="spectra"> |
| 5455 <param name="remove_zoom" value="false"/> | 5427 <param name="remove_zoom" value="false"/> |
| 5456 <param name="remove_mode" value=""/> | |
| 5457 <param name="remove_activation" value=""/> | |
| 5458 <param name="remove_collision_energy" value=":"/> | 5428 <param name="remove_collision_energy" value=":"/> |
| 5459 <param name="remove_isolation_window_width" value=":"/> | 5429 <param name="remove_isolation_window_width" value=":"/> |
| 5460 <param name="select_zoom" value="false"/> | 5430 <param name="select_zoom" value="false"/> |
| 5461 <param name="select_mode" value=""/> | |
| 5462 <param name="select_activation" value=""/> | |
| 5463 <param name="select_collision_energy" value=":"/> | 5431 <param name="select_collision_energy" value=":"/> |
| 5464 <param name="select_isolation_window_width" value=":"/> | 5432 <param name="select_isolation_window_width" value=":"/> |
| 5465 <param name="select_polarity" value=""/> | |
| 5466 <section name="blackorwhitelist"> | 5433 <section name="blackorwhitelist"> |
| 5467 <param name="similarity_threshold" value="-1.0"/> | 5434 <param name="similarity_threshold" value="-1.0"/> |
| 5468 <param name="rt" value="0.01"/> | 5435 <param name="rt" value="0.01"/> |
| 5469 <param name="mz" value="0.01"/> | 5436 <param name="mz" value="0.01"/> |
| 5470 <param name="use_ppm_tolerance" value="false"/> | 5437 <param name="use_ppm_tolerance" value="false"/> |
| 5557 <param name="float_da" value="none"/> | 5524 <param name="float_da" value="none"/> |
| 5558 </section> | 5525 </section> |
| 5559 </section> | 5526 </section> |
| 5560 <section name="spectra"> | 5527 <section name="spectra"> |
| 5561 <param name="remove_zoom" value="false"/> | 5528 <param name="remove_zoom" value="false"/> |
| 5562 <param name="remove_mode" value=""/> | |
| 5563 <param name="remove_activation" value=""/> | |
| 5564 <param name="remove_collision_energy" value=":"/> | 5529 <param name="remove_collision_energy" value=":"/> |
| 5565 <param name="remove_isolation_window_width" value=":"/> | 5530 <param name="remove_isolation_window_width" value=":"/> |
| 5566 <param name="select_zoom" value="false"/> | 5531 <param name="select_zoom" value="false"/> |
| 5567 <param name="select_mode" value=""/> | |
| 5568 <param name="select_activation" value=""/> | |
| 5569 <param name="select_collision_energy" value=":"/> | 5532 <param name="select_collision_energy" value=":"/> |
| 5570 <param name="select_isolation_window_width" value=":"/> | 5533 <param name="select_isolation_window_width" value=":"/> |
| 5571 <param name="select_polarity" value=""/> | |
| 5572 <section name="blackorwhitelist"> | 5534 <section name="blackorwhitelist"> |
| 5573 <param name="similarity_threshold" value="-1.0"/> | 5535 <param name="similarity_threshold" value="-1.0"/> |
| 5574 <param name="rt" value="0.01"/> | 5536 <param name="rt" value="0.01"/> |
| 5575 <param name="mz" value="0.01"/> | 5537 <param name="mz" value="0.01"/> |
| 5576 <param name="use_ppm_tolerance" value="false"/> | 5538 <param name="use_ppm_tolerance" value="false"/> |
| 5663 <param name="float_da" value="none"/> | 5625 <param name="float_da" value="none"/> |
| 5664 </section> | 5626 </section> |
| 5665 </section> | 5627 </section> |
| 5666 <section name="spectra"> | 5628 <section name="spectra"> |
| 5667 <param name="remove_zoom" value="true"/> | 5629 <param name="remove_zoom" value="true"/> |
| 5668 <param name="remove_mode" value=""/> | |
| 5669 <param name="remove_activation" value=""/> | |
| 5670 <param name="remove_collision_energy" value=":"/> | 5630 <param name="remove_collision_energy" value=":"/> |
| 5671 <param name="remove_isolation_window_width" value=":"/> | 5631 <param name="remove_isolation_window_width" value=":"/> |
| 5672 <param name="select_zoom" value="false"/> | 5632 <param name="select_zoom" value="false"/> |
| 5673 <param name="select_mode" value=""/> | |
| 5674 <param name="select_activation" value=""/> | |
| 5675 <param name="select_collision_energy" value=":"/> | 5633 <param name="select_collision_energy" value=":"/> |
| 5676 <param name="select_isolation_window_width" value=":"/> | 5634 <param name="select_isolation_window_width" value=":"/> |
| 5677 <param name="select_polarity" value=""/> | |
| 5678 <section name="blackorwhitelist"> | 5635 <section name="blackorwhitelist"> |
| 5679 <param name="similarity_threshold" value="-1.0"/> | 5636 <param name="similarity_threshold" value="-1.0"/> |
| 5680 <param name="rt" value="0.01"/> | 5637 <param name="rt" value="0.01"/> |
| 5681 <param name="mz" value="0.01"/> | 5638 <param name="mz" value="0.01"/> |
| 5682 <param name="use_ppm_tolerance" value="false"/> | 5639 <param name="use_ppm_tolerance" value="false"/> |
| 5769 <param name="float_da" value="none"/> | 5726 <param name="float_da" value="none"/> |
| 5770 </section> | 5727 </section> |
| 5771 </section> | 5728 </section> |
| 5772 <section name="spectra"> | 5729 <section name="spectra"> |
| 5773 <param name="remove_zoom" value="false"/> | 5730 <param name="remove_zoom" value="false"/> |
| 5774 <param name="remove_mode" value=""/> | |
| 5775 <param name="remove_activation" value=""/> | |
| 5776 <param name="remove_collision_energy" value=":"/> | 5731 <param name="remove_collision_energy" value=":"/> |
| 5777 <param name="remove_isolation_window_width" value=":"/> | 5732 <param name="remove_isolation_window_width" value=":"/> |
| 5778 <param name="select_zoom" value="false"/> | 5733 <param name="select_zoom" value="false"/> |
| 5779 <param name="select_mode" value=""/> | |
| 5780 <param name="select_activation" value=""/> | |
| 5781 <param name="select_collision_energy" value=":"/> | 5734 <param name="select_collision_energy" value=":"/> |
| 5782 <param name="select_isolation_window_width" value=":"/> | 5735 <param name="select_isolation_window_width" value=":"/> |
| 5783 <param name="select_polarity" value=""/> | |
| 5784 <section name="blackorwhitelist"> | 5736 <section name="blackorwhitelist"> |
| 5785 <param name="similarity_threshold" value="-1.0"/> | 5737 <param name="similarity_threshold" value="-1.0"/> |
| 5786 <param name="rt" value="0.01"/> | 5738 <param name="rt" value="0.01"/> |
| 5787 <param name="mz" value="0.01"/> | 5739 <param name="mz" value="0.01"/> |
| 5788 <param name="use_ppm_tolerance" value="false"/> | 5740 <param name="use_ppm_tolerance" value="false"/> |
| 5875 <param name="float_da" value="none"/> | 5827 <param name="float_da" value="none"/> |
| 5876 </section> | 5828 </section> |
| 5877 </section> | 5829 </section> |
| 5878 <section name="spectra"> | 5830 <section name="spectra"> |
| 5879 <param name="remove_zoom" value="false"/> | 5831 <param name="remove_zoom" value="false"/> |
| 5880 <param name="remove_mode" value=""/> | |
| 5881 <param name="remove_activation" value=""/> | |
| 5882 <param name="remove_collision_energy" value=":"/> | 5832 <param name="remove_collision_energy" value=":"/> |
| 5883 <param name="remove_isolation_window_width" value=":"/> | 5833 <param name="remove_isolation_window_width" value=":"/> |
| 5884 <param name="select_zoom" value="false"/> | 5834 <param name="select_zoom" value="false"/> |
| 5885 <param name="select_mode" value=""/> | |
| 5886 <param name="select_activation" value=""/> | |
| 5887 <param name="select_collision_energy" value=":"/> | 5835 <param name="select_collision_energy" value=":"/> |
| 5888 <param name="select_isolation_window_width" value=":"/> | 5836 <param name="select_isolation_window_width" value=":"/> |
| 5889 <param name="select_polarity" value=""/> | |
| 5890 <section name="blackorwhitelist"> | 5837 <section name="blackorwhitelist"> |
| 5891 <param name="similarity_threshold" value="-1.0"/> | 5838 <param name="similarity_threshold" value="-1.0"/> |
| 5892 <param name="rt" value="0.01"/> | 5839 <param name="rt" value="0.01"/> |
| 5893 <param name="mz" value="0.01"/> | 5840 <param name="mz" value="0.01"/> |
| 5894 <param name="use_ppm_tolerance" value="false"/> | 5841 <param name="use_ppm_tolerance" value="false"/> |
| 5981 <param name="float_da" value="none"/> | 5928 <param name="float_da" value="none"/> |
| 5982 </section> | 5929 </section> |
| 5983 </section> | 5930 </section> |
| 5984 <section name="spectra"> | 5931 <section name="spectra"> |
| 5985 <param name="remove_zoom" value="false"/> | 5932 <param name="remove_zoom" value="false"/> |
| 5986 <param name="remove_mode" value=""/> | |
| 5987 <param name="remove_activation" value=""/> | |
| 5988 <param name="remove_collision_energy" value=":"/> | 5933 <param name="remove_collision_energy" value=":"/> |
| 5989 <param name="remove_isolation_window_width" value=":"/> | 5934 <param name="remove_isolation_window_width" value=":"/> |
| 5990 <param name="select_zoom" value="false"/> | 5935 <param name="select_zoom" value="false"/> |
| 5991 <param name="select_mode" value=""/> | |
| 5992 <param name="select_activation" value=""/> | |
| 5993 <param name="select_collision_energy" value=":"/> | 5936 <param name="select_collision_energy" value=":"/> |
| 5994 <param name="select_isolation_window_width" value=":"/> | 5937 <param name="select_isolation_window_width" value=":"/> |
| 5995 <param name="select_polarity" value=""/> | |
| 5996 <section name="blackorwhitelist"> | 5938 <section name="blackorwhitelist"> |
| 5997 <param name="similarity_threshold" value="-1.0"/> | 5939 <param name="similarity_threshold" value="-1.0"/> |
| 5998 <param name="rt" value="0.01"/> | 5940 <param name="rt" value="0.01"/> |
| 5999 <param name="mz" value="0.01"/> | 5941 <param name="mz" value="0.01"/> |
| 6000 <param name="use_ppm_tolerance" value="false"/> | 5942 <param name="use_ppm_tolerance" value="false"/> |
| 6087 <param name="float_da" value="none"/> | 6029 <param name="float_da" value="none"/> |
| 6088 </section> | 6030 </section> |
| 6089 </section> | 6031 </section> |
| 6090 <section name="spectra"> | 6032 <section name="spectra"> |
| 6091 <param name="remove_zoom" value="false"/> | 6033 <param name="remove_zoom" value="false"/> |
| 6092 <param name="remove_mode" value=""/> | |
| 6093 <param name="remove_activation" value=""/> | |
| 6094 <param name="remove_collision_energy" value=":"/> | 6034 <param name="remove_collision_energy" value=":"/> |
| 6095 <param name="remove_isolation_window_width" value=":"/> | 6035 <param name="remove_isolation_window_width" value=":"/> |
| 6096 <param name="select_zoom" value="false"/> | 6036 <param name="select_zoom" value="false"/> |
| 6097 <param name="select_mode" value=""/> | |
| 6098 <param name="select_activation" value=""/> | |
| 6099 <param name="select_collision_energy" value=":"/> | 6037 <param name="select_collision_energy" value=":"/> |
| 6100 <param name="select_isolation_window_width" value=":"/> | 6038 <param name="select_isolation_window_width" value=":"/> |
| 6101 <param name="select_polarity" value=""/> | |
| 6102 <section name="blackorwhitelist"> | 6039 <section name="blackorwhitelist"> |
| 6103 <param name="similarity_threshold" value="-1.0"/> | 6040 <param name="similarity_threshold" value="-1.0"/> |
| 6104 <param name="rt" value="0.01"/> | 6041 <param name="rt" value="0.01"/> |
| 6105 <param name="mz" value="0.01"/> | 6042 <param name="mz" value="0.01"/> |
| 6106 <param name="use_ppm_tolerance" value="false"/> | 6043 <param name="use_ppm_tolerance" value="false"/> |
| 6194 </section> | 6131 </section> |
| 6195 </section> | 6132 </section> |
| 6196 <section name="spectra"> | 6133 <section name="spectra"> |
| 6197 <param name="remove_zoom" value="false"/> | 6134 <param name="remove_zoom" value="false"/> |
| 6198 <param name="remove_mode" value="SelectedIonMonitoring"/> | 6135 <param name="remove_mode" value="SelectedIonMonitoring"/> |
| 6199 <param name="remove_activation" value=""/> | |
| 6200 <param name="remove_collision_energy" value=":"/> | 6136 <param name="remove_collision_energy" value=":"/> |
| 6201 <param name="remove_isolation_window_width" value=":"/> | 6137 <param name="remove_isolation_window_width" value=":"/> |
| 6202 <param name="select_zoom" value="false"/> | 6138 <param name="select_zoom" value="false"/> |
| 6203 <param name="select_mode" value=""/> | |
| 6204 <param name="select_activation" value=""/> | |
| 6205 <param name="select_collision_energy" value=":"/> | 6139 <param name="select_collision_energy" value=":"/> |
| 6206 <param name="select_isolation_window_width" value=":"/> | 6140 <param name="select_isolation_window_width" value=":"/> |
| 6207 <param name="select_polarity" value=""/> | |
| 6208 <section name="blackorwhitelist"> | 6141 <section name="blackorwhitelist"> |
| 6209 <param name="similarity_threshold" value="-1.0"/> | 6142 <param name="similarity_threshold" value="-1.0"/> |
| 6210 <param name="rt" value="0.01"/> | 6143 <param name="rt" value="0.01"/> |
| 6211 <param name="mz" value="0.01"/> | 6144 <param name="mz" value="0.01"/> |
| 6212 <param name="use_ppm_tolerance" value="false"/> | 6145 <param name="use_ppm_tolerance" value="false"/> |
| 6299 <param name="float_da" value="none"/> | 6232 <param name="float_da" value="none"/> |
| 6300 </section> | 6233 </section> |
| 6301 </section> | 6234 </section> |
| 6302 <section name="spectra"> | 6235 <section name="spectra"> |
| 6303 <param name="remove_zoom" value="false"/> | 6236 <param name="remove_zoom" value="false"/> |
| 6304 <param name="remove_mode" value=""/> | |
| 6305 <param name="remove_activation" value="Collision-induced dissociation"/> | 6237 <param name="remove_activation" value="Collision-induced dissociation"/> |
| 6306 <param name="remove_collision_energy" value=":"/> | 6238 <param name="remove_collision_energy" value=":"/> |
| 6307 <param name="remove_isolation_window_width" value=":"/> | 6239 <param name="remove_isolation_window_width" value=":"/> |
| 6308 <param name="select_zoom" value="false"/> | 6240 <param name="select_zoom" value="false"/> |
| 6309 <param name="select_mode" value=""/> | |
| 6310 <param name="select_activation" value=""/> | |
| 6311 <param name="select_collision_energy" value=":"/> | 6241 <param name="select_collision_energy" value=":"/> |
| 6312 <param name="select_isolation_window_width" value=":"/> | 6242 <param name="select_isolation_window_width" value=":"/> |
| 6313 <param name="select_polarity" value=""/> | |
| 6314 <section name="blackorwhitelist"> | 6243 <section name="blackorwhitelist"> |
| 6315 <param name="similarity_threshold" value="-1.0"/> | 6244 <param name="similarity_threshold" value="-1.0"/> |
| 6316 <param name="rt" value="0.01"/> | 6245 <param name="rt" value="0.01"/> |
| 6317 <param name="mz" value="0.01"/> | 6246 <param name="mz" value="0.01"/> |
| 6318 <param name="use_ppm_tolerance" value="false"/> | 6247 <param name="use_ppm_tolerance" value="false"/> |
| 6405 <param name="float_da" value="none"/> | 6334 <param name="float_da" value="none"/> |
| 6406 </section> | 6335 </section> |
| 6407 </section> | 6336 </section> |
| 6408 <section name="spectra"> | 6337 <section name="spectra"> |
| 6409 <param name="remove_zoom" value="false"/> | 6338 <param name="remove_zoom" value="false"/> |
| 6410 <param name="remove_mode" value=""/> | |
| 6411 <param name="remove_activation" value="Plasma desorption"/> | 6339 <param name="remove_activation" value="Plasma desorption"/> |
| 6412 <param name="remove_collision_energy" value=":"/> | 6340 <param name="remove_collision_energy" value=":"/> |
| 6413 <param name="remove_isolation_window_width" value=":"/> | 6341 <param name="remove_isolation_window_width" value=":"/> |
| 6414 <param name="select_zoom" value="false"/> | 6342 <param name="select_zoom" value="false"/> |
| 6415 <param name="select_mode" value=""/> | |
| 6416 <param name="select_activation" value=""/> | |
| 6417 <param name="select_collision_energy" value=":"/> | 6343 <param name="select_collision_energy" value=":"/> |
| 6418 <param name="select_isolation_window_width" value=":"/> | 6344 <param name="select_isolation_window_width" value=":"/> |
| 6419 <param name="select_polarity" value=""/> | |
| 6420 <section name="blackorwhitelist"> | 6345 <section name="blackorwhitelist"> |
| 6421 <param name="similarity_threshold" value="-1.0"/> | 6346 <param name="similarity_threshold" value="-1.0"/> |
| 6422 <param name="rt" value="0.01"/> | 6347 <param name="rt" value="0.01"/> |
| 6423 <param name="mz" value="0.01"/> | 6348 <param name="mz" value="0.01"/> |
| 6424 <param name="use_ppm_tolerance" value="false"/> | 6349 <param name="use_ppm_tolerance" value="false"/> |
| 6511 <param name="float_da" value="none"/> | 6436 <param name="float_da" value="none"/> |
| 6512 </section> | 6437 </section> |
| 6513 </section> | 6438 </section> |
| 6514 <section name="spectra"> | 6439 <section name="spectra"> |
| 6515 <param name="remove_zoom" value="false"/> | 6440 <param name="remove_zoom" value="false"/> |
| 6516 <param name="remove_mode" value=""/> | |
| 6517 <param name="remove_activation" value=""/> | |
| 6518 <param name="remove_collision_energy" value=":"/> | 6441 <param name="remove_collision_energy" value=":"/> |
| 6519 <param name="remove_isolation_window_width" value=":"/> | 6442 <param name="remove_isolation_window_width" value=":"/> |
| 6520 <param name="select_zoom" value="false"/> | 6443 <param name="select_zoom" value="false"/> |
| 6521 <param name="select_mode" value=""/> | |
| 6522 <param name="select_activation" value=""/> | |
| 6523 <param name="select_collision_energy" value=":"/> | 6444 <param name="select_collision_energy" value=":"/> |
| 6524 <param name="select_isolation_window_width" value=":"/> | 6445 <param name="select_isolation_window_width" value=":"/> |
| 6525 <param name="select_polarity" value=""/> | |
| 6526 <section name="blackorwhitelist"> | 6446 <section name="blackorwhitelist"> |
| 6527 <param name="similarity_threshold" value="-1.0"/> | 6447 <param name="similarity_threshold" value="-1.0"/> |
| 6528 <param name="rt" value="0.01"/> | 6448 <param name="rt" value="0.01"/> |
| 6529 <param name="mz" value="0.01"/> | 6449 <param name="mz" value="0.01"/> |
| 6530 <param name="use_ppm_tolerance" value="false"/> | 6450 <param name="use_ppm_tolerance" value="false"/> |
| 6617 <param name="float_da" value="none"/> | 6537 <param name="float_da" value="none"/> |
| 6618 </section> | 6538 </section> |
| 6619 </section> | 6539 </section> |
| 6620 <section name="spectra"> | 6540 <section name="spectra"> |
| 6621 <param name="remove_zoom" value="false"/> | 6541 <param name="remove_zoom" value="false"/> |
| 6622 <param name="remove_mode" value=""/> | |
| 6623 <param name="remove_activation" value=""/> | |
| 6624 <param name="remove_collision_energy" value=":"/> | 6542 <param name="remove_collision_energy" value=":"/> |
| 6625 <param name="remove_isolation_window_width" value=":"/> | 6543 <param name="remove_isolation_window_width" value=":"/> |
| 6626 <param name="select_zoom" value="false"/> | 6544 <param name="select_zoom" value="false"/> |
| 6627 <param name="select_mode" value=""/> | |
| 6628 <param name="select_activation" value=""/> | |
| 6629 <param name="select_collision_energy" value=":"/> | 6545 <param name="select_collision_energy" value=":"/> |
| 6630 <param name="select_isolation_window_width" value=":"/> | 6546 <param name="select_isolation_window_width" value=":"/> |
| 6631 <param name="select_polarity" value=""/> | |
| 6632 <section name="blackorwhitelist"> | 6547 <section name="blackorwhitelist"> |
| 6633 <param name="similarity_threshold" value="-1.0"/> | 6548 <param name="similarity_threshold" value="-1.0"/> |
| 6634 <param name="rt" value="0.01"/> | 6549 <param name="rt" value="0.01"/> |
| 6635 <param name="mz" value="0.01"/> | 6550 <param name="mz" value="0.01"/> |
| 6636 <param name="use_ppm_tolerance" value="false"/> | 6551 <param name="use_ppm_tolerance" value="false"/> |
| 6723 <param name="float_da" value="none"/> | 6638 <param name="float_da" value="none"/> |
| 6724 </section> | 6639 </section> |
| 6725 </section> | 6640 </section> |
| 6726 <section name="spectra"> | 6641 <section name="spectra"> |
| 6727 <param name="remove_zoom" value="false"/> | 6642 <param name="remove_zoom" value="false"/> |
| 6728 <param name="remove_mode" value=""/> | |
| 6729 <param name="remove_activation" value=""/> | |
| 6730 <param name="remove_collision_energy" value=":"/> | 6643 <param name="remove_collision_energy" value=":"/> |
| 6731 <param name="remove_isolation_window_width" value=":"/> | 6644 <param name="remove_isolation_window_width" value=":"/> |
| 6732 <param name="select_zoom" value="false"/> | 6645 <param name="select_zoom" value="false"/> |
| 6733 <param name="select_mode" value=""/> | |
| 6734 <param name="select_activation" value=""/> | |
| 6735 <param name="select_collision_energy" value=":"/> | 6646 <param name="select_collision_energy" value=":"/> |
| 6736 <param name="select_isolation_window_width" value=":"/> | 6647 <param name="select_isolation_window_width" value=":"/> |
| 6737 <param name="select_polarity" value=""/> | |
| 6738 <section name="blackorwhitelist"> | 6648 <section name="blackorwhitelist"> |
| 6739 <param name="similarity_threshold" value="-1.0"/> | 6649 <param name="similarity_threshold" value="-1.0"/> |
| 6740 <param name="rt" value="0.01"/> | 6650 <param name="rt" value="0.01"/> |
| 6741 <param name="mz" value="0.01"/> | 6651 <param name="mz" value="0.01"/> |
| 6742 <param name="use_ppm_tolerance" value="false"/> | 6652 <param name="use_ppm_tolerance" value="false"/> |
| 6829 <param name="float_da" value="none"/> | 6739 <param name="float_da" value="none"/> |
| 6830 </section> | 6740 </section> |
| 6831 </section> | 6741 </section> |
| 6832 <section name="spectra"> | 6742 <section name="spectra"> |
| 6833 <param name="remove_zoom" value="false"/> | 6743 <param name="remove_zoom" value="false"/> |
| 6834 <param name="remove_mode" value=""/> | |
| 6835 <param name="remove_activation" value=""/> | |
| 6836 <param name="remove_collision_energy" value=":"/> | 6744 <param name="remove_collision_energy" value=":"/> |
| 6837 <param name="remove_isolation_window_width" value=":"/> | 6745 <param name="remove_isolation_window_width" value=":"/> |
| 6838 <param name="select_zoom" value="false"/> | 6746 <param name="select_zoom" value="false"/> |
| 6839 <param name="select_mode" value=""/> | |
| 6840 <param name="select_activation" value=""/> | |
| 6841 <param name="select_collision_energy" value=":"/> | 6747 <param name="select_collision_energy" value=":"/> |
| 6842 <param name="select_isolation_window_width" value=":"/> | 6748 <param name="select_isolation_window_width" value=":"/> |
| 6843 <param name="select_polarity" value=""/> | |
| 6844 <section name="blackorwhitelist"> | 6749 <section name="blackorwhitelist"> |
| 6845 <param name="similarity_threshold" value="-1.0"/> | 6750 <param name="similarity_threshold" value="-1.0"/> |
| 6846 <param name="rt" value="0.01"/> | 6751 <param name="rt" value="0.01"/> |
| 6847 <param name="mz" value="0.01"/> | 6752 <param name="mz" value="0.01"/> |
| 6848 <param name="use_ppm_tolerance" value="false"/> | 6753 <param name="use_ppm_tolerance" value="false"/> |
| 6935 <param name="float_da" value="none"/> | 6840 <param name="float_da" value="none"/> |
| 6936 </section> | 6841 </section> |
| 6937 </section> | 6842 </section> |
| 6938 <section name="spectra"> | 6843 <section name="spectra"> |
| 6939 <param name="remove_zoom" value="false"/> | 6844 <param name="remove_zoom" value="false"/> |
| 6940 <param name="remove_mode" value=""/> | |
| 6941 <param name="remove_activation" value=""/> | |
| 6942 <param name="remove_collision_energy" value=":"/> | 6845 <param name="remove_collision_energy" value=":"/> |
| 6943 <param name="remove_isolation_window_width" value=":"/> | 6846 <param name="remove_isolation_window_width" value=":"/> |
| 6944 <param name="select_zoom" value="false"/> | 6847 <param name="select_zoom" value="false"/> |
| 6945 <param name="select_mode" value=""/> | |
| 6946 <param name="select_activation" value=""/> | |
| 6947 <param name="select_collision_energy" value=":"/> | 6848 <param name="select_collision_energy" value=":"/> |
| 6948 <param name="select_isolation_window_width" value=":"/> | 6849 <param name="select_isolation_window_width" value=":"/> |
| 6949 <param name="select_polarity" value=""/> | |
| 6950 <section name="blackorwhitelist"> | 6850 <section name="blackorwhitelist"> |
| 6951 <param name="similarity_threshold" value="-1.0"/> | 6851 <param name="similarity_threshold" value="-1.0"/> |
| 6952 <param name="rt" value="0.01"/> | 6852 <param name="rt" value="0.01"/> |
| 6953 <param name="mz" value="0.01"/> | 6853 <param name="mz" value="0.01"/> |
| 6954 <param name="use_ppm_tolerance" value="false"/> | 6854 <param name="use_ppm_tolerance" value="false"/> |
| 7041 <param name="float_da" value="none"/> | 6941 <param name="float_da" value="none"/> |
| 7042 </section> | 6942 </section> |
| 7043 </section> | 6943 </section> |
| 7044 <section name="spectra"> | 6944 <section name="spectra"> |
| 7045 <param name="remove_zoom" value="false"/> | 6945 <param name="remove_zoom" value="false"/> |
| 7046 <param name="remove_mode" value=""/> | |
| 7047 <param name="remove_activation" value=""/> | |
| 7048 <param name="remove_collision_energy" value=":"/> | 6946 <param name="remove_collision_energy" value=":"/> |
| 7049 <param name="remove_isolation_window_width" value=":"/> | 6947 <param name="remove_isolation_window_width" value=":"/> |
| 7050 <param name="select_zoom" value="false"/> | 6948 <param name="select_zoom" value="false"/> |
| 7051 <param name="select_mode" value=""/> | |
| 7052 <param name="select_activation" value=""/> | |
| 7053 <param name="select_collision_energy" value=":"/> | 6949 <param name="select_collision_energy" value=":"/> |
| 7054 <param name="select_isolation_window_width" value=":"/> | 6950 <param name="select_isolation_window_width" value=":"/> |
| 7055 <param name="select_polarity" value=""/> | |
| 7056 <section name="blackorwhitelist"> | 6951 <section name="blackorwhitelist"> |
| 7057 <param name="similarity_threshold" value="-1.0"/> | 6952 <param name="similarity_threshold" value="-1.0"/> |
| 7058 <param name="rt" value="0.01"/> | 6953 <param name="rt" value="0.01"/> |
| 7059 <param name="mz" value="0.01"/> | 6954 <param name="mz" value="0.01"/> |
| 7060 <param name="use_ppm_tolerance" value="false"/> | 6955 <param name="use_ppm_tolerance" value="false"/> |
| 7147 <param name="float_da" value="none"/> | 7042 <param name="float_da" value="none"/> |
| 7148 </section> | 7043 </section> |
| 7149 </section> | 7044 </section> |
| 7150 <section name="spectra"> | 7045 <section name="spectra"> |
| 7151 <param name="remove_zoom" value="false"/> | 7046 <param name="remove_zoom" value="false"/> |
| 7152 <param name="remove_mode" value=""/> | |
| 7153 <param name="remove_activation" value=""/> | |
| 7154 <param name="remove_collision_energy" value=":"/> | 7047 <param name="remove_collision_energy" value=":"/> |
| 7155 <param name="remove_isolation_window_width" value=":"/> | 7048 <param name="remove_isolation_window_width" value=":"/> |
| 7156 <param name="select_zoom" value="false"/> | 7049 <param name="select_zoom" value="false"/> |
| 7157 <param name="select_mode" value=""/> | |
| 7158 <param name="select_activation" value=""/> | |
| 7159 <param name="select_collision_energy" value=":"/> | 7050 <param name="select_collision_energy" value=":"/> |
| 7160 <param name="select_isolation_window_width" value=":"/> | 7051 <param name="select_isolation_window_width" value=":"/> |
| 7161 <param name="select_polarity" value=""/> | |
| 7162 <section name="blackorwhitelist"> | 7052 <section name="blackorwhitelist"> |
| 7163 <param name="similarity_threshold" value="-1.0"/> | 7053 <param name="similarity_threshold" value="-1.0"/> |
| 7164 <param name="rt" value="0.01"/> | 7054 <param name="rt" value="0.01"/> |
| 7165 <param name="mz" value="0.01"/> | 7055 <param name="mz" value="0.01"/> |
| 7166 <param name="use_ppm_tolerance" value="false"/> | 7056 <param name="use_ppm_tolerance" value="false"/> |
| 7253 <param name="float_da" value="none"/> | 7143 <param name="float_da" value="none"/> |
| 7254 </section> | 7144 </section> |
| 7255 </section> | 7145 </section> |
| 7256 <section name="spectra"> | 7146 <section name="spectra"> |
| 7257 <param name="remove_zoom" value="false"/> | 7147 <param name="remove_zoom" value="false"/> |
| 7258 <param name="remove_mode" value=""/> | |
| 7259 <param name="remove_activation" value=""/> | |
| 7260 <param name="remove_collision_energy" value=":"/> | 7148 <param name="remove_collision_energy" value=":"/> |
| 7261 <param name="remove_isolation_window_width" value=":"/> | 7149 <param name="remove_isolation_window_width" value=":"/> |
| 7262 <param name="select_zoom" value="false"/> | 7150 <param name="select_zoom" value="false"/> |
| 7263 <param name="select_mode" value=""/> | |
| 7264 <param name="select_activation" value=""/> | |
| 7265 <param name="select_collision_energy" value=":"/> | 7151 <param name="select_collision_energy" value=":"/> |
| 7266 <param name="select_isolation_window_width" value=":"/> | 7152 <param name="select_isolation_window_width" value=":"/> |
| 7267 <param name="select_polarity" value=""/> | |
| 7268 <section name="blackorwhitelist"> | 7153 <section name="blackorwhitelist"> |
| 7269 <param name="similarity_threshold" value="-1.0"/> | 7154 <param name="similarity_threshold" value="-1.0"/> |
| 7270 <param name="rt" value="0.01"/> | 7155 <param name="rt" value="0.01"/> |
| 7271 <param name="mz" value="0.01"/> | 7156 <param name="mz" value="0.01"/> |
| 7272 <param name="use_ppm_tolerance" value="false"/> | 7157 <param name="use_ppm_tolerance" value="false"/> |
| 7359 <param name="float_da" value="none"/> | 7244 <param name="float_da" value="none"/> |
| 7360 </section> | 7245 </section> |
| 7361 </section> | 7246 </section> |
| 7362 <section name="spectra"> | 7247 <section name="spectra"> |
| 7363 <param name="remove_zoom" value="false"/> | 7248 <param name="remove_zoom" value="false"/> |
| 7364 <param name="remove_mode" value=""/> | |
| 7365 <param name="remove_activation" value=""/> | |
| 7366 <param name="remove_collision_energy" value=":"/> | 7249 <param name="remove_collision_energy" value=":"/> |
| 7367 <param name="remove_isolation_window_width" value=":"/> | 7250 <param name="remove_isolation_window_width" value=":"/> |
| 7368 <param name="select_zoom" value="false"/> | 7251 <param name="select_zoom" value="false"/> |
| 7369 <param name="select_mode" value=""/> | |
| 7370 <param name="select_activation" value=""/> | |
| 7371 <param name="select_collision_energy" value=":"/> | 7252 <param name="select_collision_energy" value=":"/> |
| 7372 <param name="select_isolation_window_width" value=":"/> | 7253 <param name="select_isolation_window_width" value=":"/> |
| 7373 <param name="select_polarity" value=""/> | |
| 7374 <section name="blackorwhitelist"> | 7254 <section name="blackorwhitelist"> |
| 7375 <param name="similarity_threshold" value="-1.0"/> | 7255 <param name="similarity_threshold" value="-1.0"/> |
| 7376 <param name="rt" value="0.01"/> | 7256 <param name="rt" value="0.01"/> |
| 7377 <param name="mz" value="0.01"/> | 7257 <param name="mz" value="0.01"/> |
| 7378 <param name="use_ppm_tolerance" value="false"/> | 7258 <param name="use_ppm_tolerance" value="false"/> |
| 7465 <param name="float_da" value="none"/> | 7345 <param name="float_da" value="none"/> |
| 7466 </section> | 7346 </section> |
| 7467 </section> | 7347 </section> |
| 7468 <section name="spectra"> | 7348 <section name="spectra"> |
| 7469 <param name="remove_zoom" value="false"/> | 7349 <param name="remove_zoom" value="false"/> |
| 7470 <param name="remove_mode" value=""/> | |
| 7471 <param name="remove_activation" value=""/> | |
| 7472 <param name="remove_collision_energy" value=":"/> | 7350 <param name="remove_collision_energy" value=":"/> |
| 7473 <param name="remove_isolation_window_width" value=":"/> | 7351 <param name="remove_isolation_window_width" value=":"/> |
| 7474 <param name="select_zoom" value="false"/> | 7352 <param name="select_zoom" value="false"/> |
| 7475 <param name="select_mode" value=""/> | |
| 7476 <param name="select_activation" value=""/> | |
| 7477 <param name="select_collision_energy" value=":"/> | 7353 <param name="select_collision_energy" value=":"/> |
| 7478 <param name="select_isolation_window_width" value=":"/> | 7354 <param name="select_isolation_window_width" value=":"/> |
| 7479 <param name="select_polarity" value=""/> | |
| 7480 <section name="blackorwhitelist"> | 7355 <section name="blackorwhitelist"> |
| 7481 <param name="similarity_threshold" value="-1.0"/> | 7356 <param name="similarity_threshold" value="-1.0"/> |
| 7482 <param name="rt" value="0.01"/> | 7357 <param name="rt" value="0.01"/> |
| 7483 <param name="mz" value="0.01"/> | 7358 <param name="mz" value="0.01"/> |
| 7484 <param name="use_ppm_tolerance" value="false"/> | 7359 <param name="use_ppm_tolerance" value="false"/> |
| 7571 <param name="float_da" value="none"/> | 7446 <param name="float_da" value="none"/> |
| 7572 </section> | 7447 </section> |
| 7573 </section> | 7448 </section> |
| 7574 <section name="spectra"> | 7449 <section name="spectra"> |
| 7575 <param name="remove_zoom" value="false"/> | 7450 <param name="remove_zoom" value="false"/> |
| 7576 <param name="remove_mode" value=""/> | |
| 7577 <param name="remove_activation" value=""/> | |
| 7578 <param name="remove_collision_energy" value=":"/> | 7451 <param name="remove_collision_energy" value=":"/> |
| 7579 <param name="remove_isolation_window_width" value=":"/> | 7452 <param name="remove_isolation_window_width" value=":"/> |
| 7580 <param name="select_zoom" value="false"/> | 7453 <param name="select_zoom" value="false"/> |
| 7581 <param name="select_mode" value=""/> | |
| 7582 <param name="select_activation" value=""/> | |
| 7583 <param name="select_collision_energy" value=":"/> | 7454 <param name="select_collision_energy" value=":"/> |
| 7584 <param name="select_isolation_window_width" value=":"/> | 7455 <param name="select_isolation_window_width" value=":"/> |
| 7585 <param name="select_polarity" value=""/> | |
| 7586 <section name="blackorwhitelist"> | 7456 <section name="blackorwhitelist"> |
| 7587 <param name="similarity_threshold" value="-1.0"/> | 7457 <param name="similarity_threshold" value="-1.0"/> |
| 7588 <param name="rt" value="0.01"/> | 7458 <param name="rt" value="0.01"/> |
| 7589 <param name="mz" value="0.01"/> | 7459 <param name="mz" value="0.01"/> |
| 7590 <param name="use_ppm_tolerance" value="false"/> | 7460 <param name="use_ppm_tolerance" value="false"/> |
| 7677 <param name="float_da" value="none"/> | 7547 <param name="float_da" value="none"/> |
| 7678 </section> | 7548 </section> |
| 7679 </section> | 7549 </section> |
| 7680 <section name="spectra"> | 7550 <section name="spectra"> |
| 7681 <param name="remove_zoom" value="false"/> | 7551 <param name="remove_zoom" value="false"/> |
| 7682 <param name="remove_mode" value=""/> | |
| 7683 <param name="remove_activation" value=""/> | |
| 7684 <param name="remove_collision_energy" value=":"/> | 7552 <param name="remove_collision_energy" value=":"/> |
| 7685 <param name="remove_isolation_window_width" value=":"/> | 7553 <param name="remove_isolation_window_width" value=":"/> |
| 7686 <param name="select_zoom" value="false"/> | 7554 <param name="select_zoom" value="false"/> |
| 7687 <param name="select_mode" value=""/> | |
| 7688 <param name="select_activation" value=""/> | |
| 7689 <param name="select_collision_energy" value=":"/> | 7555 <param name="select_collision_energy" value=":"/> |
| 7690 <param name="select_isolation_window_width" value=":"/> | 7556 <param name="select_isolation_window_width" value=":"/> |
| 7691 <param name="select_polarity" value=""/> | |
| 7692 <section name="blackorwhitelist"> | 7557 <section name="blackorwhitelist"> |
| 7693 <param name="similarity_threshold" value="-1.0"/> | 7558 <param name="similarity_threshold" value="-1.0"/> |
| 7694 <param name="rt" value="0.01"/> | 7559 <param name="rt" value="0.01"/> |
| 7695 <param name="mz" value="0.01"/> | 7560 <param name="mz" value="0.01"/> |
| 7696 <param name="use_ppm_tolerance" value="false"/> | 7561 <param name="use_ppm_tolerance" value="false"/> |
| 7783 <param name="float_da" value="none"/> | 7648 <param name="float_da" value="none"/> |
| 7784 </section> | 7649 </section> |
| 7785 </section> | 7650 </section> |
| 7786 <section name="spectra"> | 7651 <section name="spectra"> |
| 7787 <param name="remove_zoom" value="false"/> | 7652 <param name="remove_zoom" value="false"/> |
| 7788 <param name="remove_mode" value=""/> | |
| 7789 <param name="remove_activation" value=""/> | |
| 7790 <param name="remove_collision_energy" value=":"/> | 7653 <param name="remove_collision_energy" value=":"/> |
| 7791 <param name="remove_isolation_window_width" value=":"/> | 7654 <param name="remove_isolation_window_width" value=":"/> |
| 7792 <param name="select_zoom" value="false"/> | 7655 <param name="select_zoom" value="false"/> |
| 7793 <param name="select_mode" value=""/> | |
| 7794 <param name="select_activation" value=""/> | |
| 7795 <param name="select_collision_energy" value=":"/> | 7656 <param name="select_collision_energy" value=":"/> |
| 7796 <param name="select_isolation_window_width" value=":"/> | 7657 <param name="select_isolation_window_width" value=":"/> |
| 7797 <param name="select_polarity" value=""/> | |
| 7798 <section name="blackorwhitelist"> | 7658 <section name="blackorwhitelist"> |
| 7799 <param name="similarity_threshold" value="-1.0"/> | 7659 <param name="similarity_threshold" value="-1.0"/> |
| 7800 <param name="rt" value="0.01"/> | 7660 <param name="rt" value="0.01"/> |
| 7801 <param name="mz" value="0.01"/> | 7661 <param name="mz" value="0.01"/> |
| 7802 <param name="use_ppm_tolerance" value="false"/> | 7662 <param name="use_ppm_tolerance" value="false"/> |
| 7889 <param name="float_da" value="none"/> | 7749 <param name="float_da" value="none"/> |
| 7890 </section> | 7750 </section> |
| 7891 </section> | 7751 </section> |
| 7892 <section name="spectra"> | 7752 <section name="spectra"> |
| 7893 <param name="remove_zoom" value="false"/> | 7753 <param name="remove_zoom" value="false"/> |
| 7894 <param name="remove_mode" value=""/> | |
| 7895 <param name="remove_activation" value=""/> | |
| 7896 <param name="remove_collision_energy" value=":"/> | 7754 <param name="remove_collision_energy" value=":"/> |
| 7897 <param name="remove_isolation_window_width" value=":"/> | 7755 <param name="remove_isolation_window_width" value=":"/> |
| 7898 <param name="select_zoom" value="false"/> | 7756 <param name="select_zoom" value="false"/> |
| 7899 <param name="select_mode" value=""/> | |
| 7900 <param name="select_activation" value=""/> | |
| 7901 <param name="select_collision_energy" value=":"/> | 7757 <param name="select_collision_energy" value=":"/> |
| 7902 <param name="select_isolation_window_width" value=":"/> | 7758 <param name="select_isolation_window_width" value=":"/> |
| 7903 <param name="select_polarity" value=""/> | |
| 7904 <section name="blackorwhitelist"> | 7759 <section name="blackorwhitelist"> |
| 7905 <param name="similarity_threshold" value="-1.0"/> | 7760 <param name="similarity_threshold" value="-1.0"/> |
| 7906 <param name="rt" value="0.01"/> | 7761 <param name="rt" value="0.01"/> |
| 7907 <param name="mz" value="0.01"/> | 7762 <param name="mz" value="0.01"/> |
| 7908 <param name="use_ppm_tolerance" value="false"/> | 7763 <param name="use_ppm_tolerance" value="false"/> |
| 7996 <param name="float_da" value="none"/> | 7851 <param name="float_da" value="none"/> |
| 7997 </section> | 7852 </section> |
| 7998 </section> | 7853 </section> |
| 7999 <section name="spectra"> | 7854 <section name="spectra"> |
| 8000 <param name="remove_zoom" value="false"/> | 7855 <param name="remove_zoom" value="false"/> |
| 8001 <param name="remove_mode" value=""/> | |
| 8002 <param name="remove_activation" value=""/> | |
| 8003 <param name="remove_collision_energy" value=":"/> | 7856 <param name="remove_collision_energy" value=":"/> |
| 8004 <param name="remove_isolation_window_width" value=":"/> | 7857 <param name="remove_isolation_window_width" value=":"/> |
| 8005 <param name="select_zoom" value="false"/> | 7858 <param name="select_zoom" value="false"/> |
| 8006 <param name="select_mode" value=""/> | |
| 8007 <param name="select_activation" value=""/> | |
| 8008 <param name="select_collision_energy" value=":"/> | 7859 <param name="select_collision_energy" value=":"/> |
| 8009 <param name="select_isolation_window_width" value=":"/> | 7860 <param name="select_isolation_window_width" value=":"/> |
| 8010 <param name="select_polarity" value=""/> | |
| 8011 <section name="blackorwhitelist"> | 7861 <section name="blackorwhitelist"> |
| 8012 <param name="similarity_threshold" value="-1.0"/> | 7862 <param name="similarity_threshold" value="-1.0"/> |
| 8013 <param name="rt" value="0.01"/> | 7863 <param name="rt" value="0.01"/> |
| 8014 <param name="mz" value="0.01"/> | 7864 <param name="mz" value="0.01"/> |
| 8015 <param name="use_ppm_tolerance" value="false"/> | 7865 <param name="use_ppm_tolerance" value="false"/> |
| 8103 <param name="float_da" value="none"/> | 7953 <param name="float_da" value="none"/> |
| 8104 </section> | 7954 </section> |
| 8105 </section> | 7955 </section> |
| 8106 <section name="spectra"> | 7956 <section name="spectra"> |
| 8107 <param name="remove_zoom" value="false"/> | 7957 <param name="remove_zoom" value="false"/> |
| 8108 <param name="remove_mode" value=""/> | |
| 8109 <param name="remove_activation" value=""/> | |
| 8110 <param name="remove_collision_energy" value=":"/> | 7958 <param name="remove_collision_energy" value=":"/> |
| 8111 <param name="remove_isolation_window_width" value=":"/> | 7959 <param name="remove_isolation_window_width" value=":"/> |
| 8112 <param name="select_zoom" value="false"/> | 7960 <param name="select_zoom" value="false"/> |
| 8113 <param name="select_mode" value=""/> | |
| 8114 <param name="select_activation" value=""/> | |
| 8115 <param name="select_collision_energy" value=":"/> | 7961 <param name="select_collision_energy" value=":"/> |
| 8116 <param name="select_isolation_window_width" value=":"/> | 7962 <param name="select_isolation_window_width" value=":"/> |
| 8117 <param name="select_polarity" value=""/> | |
| 8118 <section name="blackorwhitelist"> | 7963 <section name="blackorwhitelist"> |
| 8119 <param name="similarity_threshold" value="-1.0"/> | 7964 <param name="similarity_threshold" value="-1.0"/> |
| 8120 <param name="rt" value="0.01"/> | 7965 <param name="rt" value="0.01"/> |
| 8121 <param name="mz" value="0.01"/> | 7966 <param name="mz" value="0.01"/> |
| 8122 <param name="use_ppm_tolerance" value="false"/> | 7967 <param name="use_ppm_tolerance" value="false"/> |
| 8209 <param name="float_da" value="none"/> | 8054 <param name="float_da" value="none"/> |
| 8210 </section> | 8055 </section> |
| 8211 </section> | 8056 </section> |
| 8212 <section name="spectra"> | 8057 <section name="spectra"> |
| 8213 <param name="remove_zoom" value="false"/> | 8058 <param name="remove_zoom" value="false"/> |
| 8214 <param name="remove_mode" value=""/> | |
| 8215 <param name="remove_activation" value=""/> | |
| 8216 <param name="remove_collision_energy" value=":"/> | 8059 <param name="remove_collision_energy" value=":"/> |
| 8217 <param name="remove_isolation_window_width" value=":"/> | 8060 <param name="remove_isolation_window_width" value=":"/> |
| 8218 <param name="select_zoom" value="false"/> | 8061 <param name="select_zoom" value="false"/> |
| 8219 <param name="select_mode" value=""/> | |
| 8220 <param name="select_activation" value=""/> | |
| 8221 <param name="select_collision_energy" value=":"/> | 8062 <param name="select_collision_energy" value=":"/> |
| 8222 <param name="select_isolation_window_width" value=":"/> | 8063 <param name="select_isolation_window_width" value=":"/> |
| 8223 <param name="select_polarity" value=""/> | |
| 8224 <section name="blackorwhitelist"> | 8064 <section name="blackorwhitelist"> |
| 8225 <param name="similarity_threshold" value="-1.0"/> | 8065 <param name="similarity_threshold" value="-1.0"/> |
| 8226 <param name="rt" value="0.01"/> | 8066 <param name="rt" value="0.01"/> |
| 8227 <param name="mz" value="0.01"/> | 8067 <param name="mz" value="0.01"/> |
| 8228 <param name="use_ppm_tolerance" value="false"/> | 8068 <param name="use_ppm_tolerance" value="false"/> |
| 8315 <param name="float_da" value="none"/> | 8155 <param name="float_da" value="none"/> |
| 8316 </section> | 8156 </section> |
| 8317 </section> | 8157 </section> |
| 8318 <section name="spectra"> | 8158 <section name="spectra"> |
| 8319 <param name="remove_zoom" value="false"/> | 8159 <param name="remove_zoom" value="false"/> |
| 8320 <param name="remove_mode" value=""/> | |
| 8321 <param name="remove_activation" value=""/> | |
| 8322 <param name="remove_collision_energy" value=":"/> | 8160 <param name="remove_collision_energy" value=":"/> |
| 8323 <param name="remove_isolation_window_width" value=":"/> | 8161 <param name="remove_isolation_window_width" value=":"/> |
| 8324 <param name="select_zoom" value="false"/> | 8162 <param name="select_zoom" value="false"/> |
| 8325 <param name="select_mode" value=""/> | |
| 8326 <param name="select_activation" value=""/> | |
| 8327 <param name="select_collision_energy" value=":"/> | 8163 <param name="select_collision_energy" value=":"/> |
| 8328 <param name="select_isolation_window_width" value=":"/> | 8164 <param name="select_isolation_window_width" value=":"/> |
| 8329 <param name="select_polarity" value=""/> | |
| 8330 <section name="blackorwhitelist"> | 8165 <section name="blackorwhitelist"> |
| 8331 <param name="similarity_threshold" value="-1.0"/> | 8166 <param name="similarity_threshold" value="-1.0"/> |
| 8332 <param name="rt" value="0.01"/> | 8167 <param name="rt" value="0.01"/> |
| 8333 <param name="mz" value="0.01"/> | 8168 <param name="mz" value="0.01"/> |
| 8334 <param name="use_ppm_tolerance" value="false"/> | 8169 <param name="use_ppm_tolerance" value="false"/> |
| 8421 <param name="float_da" value="none"/> | 8256 <param name="float_da" value="none"/> |
| 8422 </section> | 8257 </section> |
| 8423 </section> | 8258 </section> |
| 8424 <section name="spectra"> | 8259 <section name="spectra"> |
| 8425 <param name="remove_zoom" value="false"/> | 8260 <param name="remove_zoom" value="false"/> |
| 8426 <param name="remove_mode" value=""/> | |
| 8427 <param name="remove_activation" value=""/> | |
| 8428 <param name="remove_collision_energy" value=":"/> | 8261 <param name="remove_collision_energy" value=":"/> |
| 8429 <param name="remove_isolation_window_width" value=":2"/> | 8262 <param name="remove_isolation_window_width" value=":2"/> |
| 8430 <param name="select_zoom" value="false"/> | 8263 <param name="select_zoom" value="false"/> |
| 8431 <param name="select_mode" value=""/> | |
| 8432 <param name="select_activation" value=""/> | |
| 8433 <param name="select_collision_energy" value=":"/> | 8264 <param name="select_collision_energy" value=":"/> |
| 8434 <param name="select_isolation_window_width" value=":"/> | 8265 <param name="select_isolation_window_width" value=":"/> |
| 8435 <param name="select_polarity" value=""/> | |
| 8436 <section name="blackorwhitelist"> | 8266 <section name="blackorwhitelist"> |
| 8437 <param name="similarity_threshold" value="-1.0"/> | 8267 <param name="similarity_threshold" value="-1.0"/> |
| 8438 <param name="rt" value="0.01"/> | 8268 <param name="rt" value="0.01"/> |
| 8439 <param name="mz" value="0.01"/> | 8269 <param name="mz" value="0.01"/> |
| 8440 <param name="use_ppm_tolerance" value="false"/> | 8270 <param name="use_ppm_tolerance" value="false"/> |
| 8527 <param name="float_da" value="none"/> | 8357 <param name="float_da" value="none"/> |
| 8528 </section> | 8358 </section> |
| 8529 </section> | 8359 </section> |
| 8530 <section name="spectra"> | 8360 <section name="spectra"> |
| 8531 <param name="remove_zoom" value="false"/> | 8361 <param name="remove_zoom" value="false"/> |
| 8532 <param name="remove_mode" value=""/> | |
| 8533 <param name="remove_activation" value=""/> | |
| 8534 <param name="remove_collision_energy" value=":"/> | 8362 <param name="remove_collision_energy" value=":"/> |
| 8535 <param name="remove_isolation_window_width" value=":"/> | 8363 <param name="remove_isolation_window_width" value=":"/> |
| 8536 <param name="select_zoom" value="false"/> | 8364 <param name="select_zoom" value="false"/> |
| 8537 <param name="select_mode" value=""/> | |
| 8538 <param name="select_activation" value=""/> | |
| 8539 <param name="select_collision_energy" value=":"/> | 8365 <param name="select_collision_energy" value=":"/> |
| 8540 <param name="select_isolation_window_width" value=":2"/> | 8366 <param name="select_isolation_window_width" value=":2"/> |
| 8541 <param name="select_polarity" value=""/> | |
| 8542 <section name="blackorwhitelist"> | 8367 <section name="blackorwhitelist"> |
| 8543 <param name="similarity_threshold" value="-1.0"/> | 8368 <param name="similarity_threshold" value="-1.0"/> |
| 8544 <param name="rt" value="0.01"/> | 8369 <param name="rt" value="0.01"/> |
| 8545 <param name="mz" value="0.01"/> | 8370 <param name="mz" value="0.01"/> |
| 8546 <param name="use_ppm_tolerance" value="false"/> | 8371 <param name="use_ppm_tolerance" value="false"/> |
| 8633 <param name="float_da" value="none"/> | 8458 <param name="float_da" value="none"/> |
| 8634 </section> | 8459 </section> |
| 8635 </section> | 8460 </section> |
| 8636 <section name="spectra"> | 8461 <section name="spectra"> |
| 8637 <param name="remove_zoom" value="false"/> | 8462 <param name="remove_zoom" value="false"/> |
| 8638 <param name="remove_mode" value=""/> | |
| 8639 <param name="remove_activation" value=""/> | |
| 8640 <param name="remove_collision_energy" value=":35"/> | 8463 <param name="remove_collision_energy" value=":35"/> |
| 8641 <param name="remove_isolation_window_width" value=":"/> | 8464 <param name="remove_isolation_window_width" value=":"/> |
| 8642 <param name="select_zoom" value="false"/> | 8465 <param name="select_zoom" value="false"/> |
| 8643 <param name="select_mode" value=""/> | |
| 8644 <param name="select_activation" value=""/> | |
| 8645 <param name="select_collision_energy" value=":"/> | 8466 <param name="select_collision_energy" value=":"/> |
| 8646 <param name="select_isolation_window_width" value=":"/> | 8467 <param name="select_isolation_window_width" value=":"/> |
| 8647 <param name="select_polarity" value=""/> | |
| 8648 <section name="blackorwhitelist"> | 8468 <section name="blackorwhitelist"> |
| 8649 <param name="similarity_threshold" value="-1.0"/> | 8469 <param name="similarity_threshold" value="-1.0"/> |
| 8650 <param name="rt" value="0.01"/> | 8470 <param name="rt" value="0.01"/> |
| 8651 <param name="mz" value="0.01"/> | 8471 <param name="mz" value="0.01"/> |
| 8652 <param name="use_ppm_tolerance" value="false"/> | 8472 <param name="use_ppm_tolerance" value="false"/> |
| 8739 <param name="float_da" value="none"/> | 8559 <param name="float_da" value="none"/> |
| 8740 </section> | 8560 </section> |
| 8741 </section> | 8561 </section> |
| 8742 <section name="spectra"> | 8562 <section name="spectra"> |
| 8743 <param name="remove_zoom" value="false"/> | 8563 <param name="remove_zoom" value="false"/> |
| 8744 <param name="remove_mode" value=""/> | |
| 8745 <param name="remove_activation" value=""/> | |
| 8746 <param name="remove_collision_energy" value=":"/> | 8564 <param name="remove_collision_energy" value=":"/> |
| 8747 <param name="remove_isolation_window_width" value=":"/> | 8565 <param name="remove_isolation_window_width" value=":"/> |
| 8748 <param name="select_zoom" value="false"/> | 8566 <param name="select_zoom" value="false"/> |
| 8749 <param name="select_mode" value=""/> | |
| 8750 <param name="select_activation" value=""/> | |
| 8751 <param name="select_collision_energy" value=":35"/> | 8567 <param name="select_collision_energy" value=":35"/> |
| 8752 <param name="select_isolation_window_width" value=":"/> | 8568 <param name="select_isolation_window_width" value=":"/> |
| 8753 <param name="select_polarity" value=""/> | |
| 8754 <section name="blackorwhitelist"> | 8569 <section name="blackorwhitelist"> |
| 8755 <param name="similarity_threshold" value="-1.0"/> | 8570 <param name="similarity_threshold" value="-1.0"/> |
| 8756 <param name="rt" value="0.01"/> | 8571 <param name="rt" value="0.01"/> |
| 8757 <param name="mz" value="0.01"/> | 8572 <param name="mz" value="0.01"/> |
| 8758 <param name="use_ppm_tolerance" value="false"/> | 8573 <param name="use_ppm_tolerance" value="false"/> |
| 8845 <param name="float_da" value="none"/> | 8660 <param name="float_da" value="none"/> |
| 8846 </section> | 8661 </section> |
| 8847 </section> | 8662 </section> |
| 8848 <section name="spectra"> | 8663 <section name="spectra"> |
| 8849 <param name="remove_zoom" value="false"/> | 8664 <param name="remove_zoom" value="false"/> |
| 8850 <param name="remove_mode" value=""/> | |
| 8851 <param name="remove_activation" value=""/> | |
| 8852 <param name="remove_collision_energy" value=":"/> | 8665 <param name="remove_collision_energy" value=":"/> |
| 8853 <param name="remove_isolation_window_width" value=":"/> | 8666 <param name="remove_isolation_window_width" value=":"/> |
| 8854 <param name="select_zoom" value="false"/> | 8667 <param name="select_zoom" value="false"/> |
| 8855 <param name="select_mode" value=""/> | |
| 8856 <param name="select_activation" value=""/> | |
| 8857 <param name="select_collision_energy" value=":"/> | 8668 <param name="select_collision_energy" value=":"/> |
| 8858 <param name="select_isolation_window_width" value=":"/> | 8669 <param name="select_isolation_window_width" value=":"/> |
| 8859 <param name="select_polarity" value=""/> | |
| 8860 <section name="blackorwhitelist"> | 8670 <section name="blackorwhitelist"> |
| 8861 <param name="similarity_threshold" value="-1.0"/> | 8671 <param name="similarity_threshold" value="-1.0"/> |
| 8862 <param name="rt" value="0.01"/> | 8672 <param name="rt" value="0.01"/> |
| 8863 <param name="mz" value="0.01"/> | 8673 <param name="mz" value="0.01"/> |
| 8864 <param name="use_ppm_tolerance" value="false"/> | 8674 <param name="use_ppm_tolerance" value="false"/> |
| 8951 <param name="float_da" value="none"/> | 8761 <param name="float_da" value="none"/> |
| 8952 </section> | 8762 </section> |
| 8953 </section> | 8763 </section> |
| 8954 <section name="spectra"> | 8764 <section name="spectra"> |
| 8955 <param name="remove_zoom" value="false"/> | 8765 <param name="remove_zoom" value="false"/> |
| 8956 <param name="remove_mode" value=""/> | |
| 8957 <param name="remove_activation" value=""/> | |
| 8958 <param name="remove_collision_energy" value=":"/> | 8766 <param name="remove_collision_energy" value=":"/> |
| 8959 <param name="remove_isolation_window_width" value=":"/> | 8767 <param name="remove_isolation_window_width" value=":"/> |
| 8960 <param name="select_zoom" value="false"/> | 8768 <param name="select_zoom" value="false"/> |
| 8961 <param name="select_mode" value=""/> | |
| 8962 <param name="select_activation" value=""/> | |
| 8963 <param name="select_collision_energy" value=":"/> | 8769 <param name="select_collision_energy" value=":"/> |
| 8964 <param name="select_isolation_window_width" value=":"/> | 8770 <param name="select_isolation_window_width" value=":"/> |
| 8965 <param name="select_polarity" value=""/> | |
| 8966 <section name="blackorwhitelist"> | 8771 <section name="blackorwhitelist"> |
| 8967 <param name="similarity_threshold" value="-1.0"/> | 8772 <param name="similarity_threshold" value="-1.0"/> |
| 8968 <param name="rt" value="0.01"/> | 8773 <param name="rt" value="0.01"/> |
| 8969 <param name="mz" value="0.01"/> | 8774 <param name="mz" value="0.01"/> |
| 8970 <param name="use_ppm_tolerance" value="false"/> | 8775 <param name="use_ppm_tolerance" value="false"/> |
| 9057 <param name="float_da" value="none"/> | 8862 <param name="float_da" value="none"/> |
| 9058 </section> | 8863 </section> |
| 9059 </section> | 8864 </section> |
| 9060 <section name="spectra"> | 8865 <section name="spectra"> |
| 9061 <param name="remove_zoom" value="false"/> | 8866 <param name="remove_zoom" value="false"/> |
| 9062 <param name="remove_mode" value=""/> | |
| 9063 <param name="remove_activation" value=""/> | |
| 9064 <param name="remove_collision_energy" value=":"/> | 8867 <param name="remove_collision_energy" value=":"/> |
| 9065 <param name="remove_isolation_window_width" value=":"/> | 8868 <param name="remove_isolation_window_width" value=":"/> |
| 9066 <param name="select_zoom" value="false"/> | 8869 <param name="select_zoom" value="false"/> |
| 9067 <param name="select_mode" value=""/> | |
| 9068 <param name="select_activation" value=""/> | |
| 9069 <param name="select_collision_energy" value=":"/> | 8870 <param name="select_collision_energy" value=":"/> |
| 9070 <param name="select_isolation_window_width" value=":"/> | 8871 <param name="select_isolation_window_width" value=":"/> |
| 9071 <param name="select_polarity" value=""/> | |
| 9072 <section name="blackorwhitelist"> | 8872 <section name="blackorwhitelist"> |
| 9073 <param name="similarity_threshold" value="-1.0"/> | 8873 <param name="similarity_threshold" value="-1.0"/> |
| 9074 <param name="rt" value="0.01"/> | 8874 <param name="rt" value="0.01"/> |
| 9075 <param name="mz" value="0.01"/> | 8875 <param name="mz" value="0.01"/> |
| 9076 <param name="use_ppm_tolerance" value="false"/> | 8876 <param name="use_ppm_tolerance" value="false"/> |
| 9163 <param name="float_da" value="none"/> | 8963 <param name="float_da" value="none"/> |
| 9164 </section> | 8964 </section> |
| 9165 </section> | 8965 </section> |
| 9166 <section name="spectra"> | 8966 <section name="spectra"> |
| 9167 <param name="remove_zoom" value="false"/> | 8967 <param name="remove_zoom" value="false"/> |
| 9168 <param name="remove_mode" value=""/> | |
| 9169 <param name="remove_activation" value=""/> | |
| 9170 <param name="remove_collision_energy" value=":"/> | 8968 <param name="remove_collision_energy" value=":"/> |
| 9171 <param name="remove_isolation_window_width" value=":"/> | 8969 <param name="remove_isolation_window_width" value=":"/> |
| 9172 <param name="select_zoom" value="false"/> | 8970 <param name="select_zoom" value="false"/> |
| 9173 <param name="select_mode" value=""/> | |
| 9174 <param name="select_activation" value=""/> | |
| 9175 <param name="select_collision_energy" value=":"/> | 8971 <param name="select_collision_energy" value=":"/> |
| 9176 <param name="select_isolation_window_width" value=":"/> | 8972 <param name="select_isolation_window_width" value=":"/> |
| 9177 <param name="select_polarity" value=""/> | |
| 9178 <section name="blackorwhitelist"> | 8973 <section name="blackorwhitelist"> |
| 9179 <param name="similarity_threshold" value="-1.0"/> | 8974 <param name="similarity_threshold" value="-1.0"/> |
| 9180 <param name="rt" value="0.01"/> | 8975 <param name="rt" value="0.01"/> |
| 9181 <param name="mz" value="0.01"/> | 8976 <param name="mz" value="0.01"/> |
| 9182 <param name="use_ppm_tolerance" value="false"/> | 8977 <param name="use_ppm_tolerance" value="false"/> |
| 9269 <param name="float_da" value="none"/> | 9064 <param name="float_da" value="none"/> |
| 9270 </section> | 9065 </section> |
| 9271 </section> | 9066 </section> |
| 9272 <section name="spectra"> | 9067 <section name="spectra"> |
| 9273 <param name="remove_zoom" value="false"/> | 9068 <param name="remove_zoom" value="false"/> |
| 9274 <param name="remove_mode" value=""/> | |
| 9275 <param name="remove_activation" value=""/> | |
| 9276 <param name="remove_collision_energy" value=":"/> | 9069 <param name="remove_collision_energy" value=":"/> |
| 9277 <param name="remove_isolation_window_width" value=":"/> | 9070 <param name="remove_isolation_window_width" value=":"/> |
| 9278 <param name="select_zoom" value="false"/> | 9071 <param name="select_zoom" value="false"/> |
| 9279 <param name="select_mode" value=""/> | |
| 9280 <param name="select_activation" value=""/> | |
| 9281 <param name="select_collision_energy" value=":"/> | 9072 <param name="select_collision_energy" value=":"/> |
| 9282 <param name="select_isolation_window_width" value=":"/> | 9073 <param name="select_isolation_window_width" value=":"/> |
| 9283 <param name="select_polarity" value="positive"/> | 9074 <param name="select_polarity" value="positive"/> |
| 9284 <section name="blackorwhitelist"> | 9075 <section name="blackorwhitelist"> |
| 9285 <param name="similarity_threshold" value="-1.0"/> | 9076 <param name="similarity_threshold" value="-1.0"/> |
| 9375 <param name="float_da" value="none"/> | 9166 <param name="float_da" value="none"/> |
| 9376 </section> | 9167 </section> |
| 9377 </section> | 9168 </section> |
| 9378 <section name="spectra"> | 9169 <section name="spectra"> |
| 9379 <param name="remove_zoom" value="false"/> | 9170 <param name="remove_zoom" value="false"/> |
| 9380 <param name="remove_mode" value=""/> | |
| 9381 <param name="remove_activation" value=""/> | |
| 9382 <param name="remove_collision_energy" value=":"/> | 9171 <param name="remove_collision_energy" value=":"/> |
| 9383 <param name="remove_isolation_window_width" value=":"/> | 9172 <param name="remove_isolation_window_width" value=":"/> |
| 9384 <param name="select_zoom" value="false"/> | 9173 <param name="select_zoom" value="false"/> |
| 9385 <param name="select_mode" value=""/> | |
| 9386 <param name="select_activation" value=""/> | |
| 9387 <param name="select_collision_energy" value=":"/> | 9174 <param name="select_collision_energy" value=":"/> |
| 9388 <param name="select_isolation_window_width" value=":"/> | 9175 <param name="select_isolation_window_width" value=":"/> |
| 9389 <param name="select_polarity" value="negative"/> | 9176 <param name="select_polarity" value="negative"/> |
| 9390 <section name="blackorwhitelist"> | 9177 <section name="blackorwhitelist"> |
| 9391 <param name="similarity_threshold" value="-1.0"/> | 9178 <param name="similarity_threshold" value="-1.0"/> |
| 9481 <param name="float_da" value="none"/> | 9268 <param name="float_da" value="none"/> |
| 9482 </section> | 9269 </section> |
| 9483 </section> | 9270 </section> |
| 9484 <section name="spectra"> | 9271 <section name="spectra"> |
| 9485 <param name="remove_zoom" value="false"/> | 9272 <param name="remove_zoom" value="false"/> |
| 9486 <param name="remove_mode" value=""/> | |
| 9487 <param name="remove_activation" value=""/> | |
| 9488 <param name="remove_collision_energy" value=":"/> | 9273 <param name="remove_collision_energy" value=":"/> |
| 9489 <param name="remove_isolation_window_width" value=":"/> | 9274 <param name="remove_isolation_window_width" value=":"/> |
| 9490 <param name="select_zoom" value="false"/> | 9275 <param name="select_zoom" value="false"/> |
| 9491 <param name="select_mode" value=""/> | |
| 9492 <param name="select_activation" value=""/> | |
| 9493 <param name="select_collision_energy" value=":"/> | 9276 <param name="select_collision_energy" value=":"/> |
| 9494 <param name="select_isolation_window_width" value=":"/> | 9277 <param name="select_isolation_window_width" value=":"/> |
| 9495 <param name="select_polarity" value=""/> | |
| 9496 <section name="blackorwhitelist"> | 9278 <section name="blackorwhitelist"> |
| 9497 <param name="similarity_threshold" value="-1.0"/> | 9279 <param name="similarity_threshold" value="-1.0"/> |
| 9498 <param name="rt" value="0.01"/> | 9280 <param name="rt" value="0.01"/> |
| 9499 <param name="mz" value="0.01"/> | 9281 <param name="mz" value="0.01"/> |
| 9500 <param name="use_ppm_tolerance" value="false"/> | 9282 <param name="use_ppm_tolerance" value="false"/> |
| 9587 <param name="float_da" value="none"/> | 9369 <param name="float_da" value="none"/> |
| 9588 </section> | 9370 </section> |
| 9589 </section> | 9371 </section> |
| 9590 <section name="spectra"> | 9372 <section name="spectra"> |
| 9591 <param name="remove_zoom" value="false"/> | 9373 <param name="remove_zoom" value="false"/> |
| 9592 <param name="remove_mode" value=""/> | |
| 9593 <param name="remove_activation" value=""/> | |
| 9594 <param name="remove_collision_energy" value=":"/> | 9374 <param name="remove_collision_energy" value=":"/> |
| 9595 <param name="remove_isolation_window_width" value=":"/> | 9375 <param name="remove_isolation_window_width" value=":"/> |
| 9596 <param name="select_zoom" value="false"/> | 9376 <param name="select_zoom" value="false"/> |
| 9597 <param name="select_mode" value=""/> | |
| 9598 <param name="select_activation" value=""/> | |
| 9599 <param name="select_collision_energy" value=":"/> | 9377 <param name="select_collision_energy" value=":"/> |
| 9600 <param name="select_isolation_window_width" value=":"/> | 9378 <param name="select_isolation_window_width" value=":"/> |
| 9601 <param name="select_polarity" value=""/> | |
| 9602 <section name="blackorwhitelist"> | 9379 <section name="blackorwhitelist"> |
| 9603 <param name="similarity_threshold" value="-1.0"/> | 9380 <param name="similarity_threshold" value="-1.0"/> |
| 9604 <param name="rt" value="0.01"/> | 9381 <param name="rt" value="0.01"/> |
| 9605 <param name="mz" value="0.01"/> | 9382 <param name="mz" value="0.01"/> |
| 9606 <param name="use_ppm_tolerance" value="false"/> | 9383 <param name="use_ppm_tolerance" value="false"/> |
| 9693 <param name="float_da" value="none"/> | 9470 <param name="float_da" value="none"/> |
| 9694 </section> | 9471 </section> |
| 9695 </section> | 9472 </section> |
| 9696 <section name="spectra"> | 9473 <section name="spectra"> |
| 9697 <param name="remove_zoom" value="false"/> | 9474 <param name="remove_zoom" value="false"/> |
| 9698 <param name="remove_mode" value=""/> | |
| 9699 <param name="remove_activation" value=""/> | |
| 9700 <param name="remove_collision_energy" value=":"/> | 9475 <param name="remove_collision_energy" value=":"/> |
| 9701 <param name="remove_isolation_window_width" value=":"/> | 9476 <param name="remove_isolation_window_width" value=":"/> |
| 9702 <param name="select_zoom" value="false"/> | 9477 <param name="select_zoom" value="false"/> |
| 9703 <param name="select_mode" value=""/> | |
| 9704 <param name="select_activation" value=""/> | |
| 9705 <param name="select_collision_energy" value=":"/> | 9478 <param name="select_collision_energy" value=":"/> |
| 9706 <param name="select_isolation_window_width" value=":"/> | 9479 <param name="select_isolation_window_width" value=":"/> |
| 9707 <param name="select_polarity" value=""/> | |
| 9708 <section name="blackorwhitelist"> | 9480 <section name="blackorwhitelist"> |
| 9709 <param name="similarity_threshold" value="-1.0"/> | 9481 <param name="similarity_threshold" value="-1.0"/> |
| 9710 <param name="rt" value="0.01"/> | 9482 <param name="rt" value="0.01"/> |
| 9711 <param name="mz" value="0.01"/> | 9483 <param name="mz" value="0.01"/> |
| 9712 <param name="use_ppm_tolerance" value="false"/> | 9484 <param name="use_ppm_tolerance" value="false"/> |
| 9799 <param name="float_da" value="none"/> | 9571 <param name="float_da" value="none"/> |
| 9800 </section> | 9572 </section> |
| 9801 </section> | 9573 </section> |
| 9802 <section name="spectra"> | 9574 <section name="spectra"> |
| 9803 <param name="remove_zoom" value="false"/> | 9575 <param name="remove_zoom" value="false"/> |
| 9804 <param name="remove_mode" value=""/> | |
| 9805 <param name="remove_activation" value=""/> | |
| 9806 <param name="remove_collision_energy" value=":"/> | 9576 <param name="remove_collision_energy" value=":"/> |
| 9807 <param name="remove_isolation_window_width" value=":"/> | 9577 <param name="remove_isolation_window_width" value=":"/> |
| 9808 <param name="select_zoom" value="false"/> | 9578 <param name="select_zoom" value="false"/> |
| 9809 <param name="select_mode" value=""/> | |
| 9810 <param name="select_activation" value=""/> | |
| 9811 <param name="select_collision_energy" value=":"/> | 9579 <param name="select_collision_energy" value=":"/> |
| 9812 <param name="select_isolation_window_width" value=":"/> | 9580 <param name="select_isolation_window_width" value=":"/> |
| 9813 <param name="select_polarity" value=""/> | |
| 9814 <section name="blackorwhitelist"> | 9581 <section name="blackorwhitelist"> |
| 9815 <param name="similarity_threshold" value="-1.0"/> | 9582 <param name="similarity_threshold" value="-1.0"/> |
| 9816 <param name="rt" value="0.01"/> | 9583 <param name="rt" value="0.01"/> |
| 9817 <param name="mz" value="0.01"/> | 9584 <param name="mz" value="0.01"/> |
| 9818 <param name="use_ppm_tolerance" value="false"/> | 9585 <param name="use_ppm_tolerance" value="false"/> |
| 9905 <param name="float_da" value="none"/> | 9672 <param name="float_da" value="none"/> |
| 9906 </section> | 9673 </section> |
| 9907 </section> | 9674 </section> |
| 9908 <section name="spectra"> | 9675 <section name="spectra"> |
| 9909 <param name="remove_zoom" value="false"/> | 9676 <param name="remove_zoom" value="false"/> |
| 9910 <param name="remove_mode" value=""/> | |
| 9911 <param name="remove_activation" value=""/> | |
| 9912 <param name="remove_collision_energy" value=":"/> | 9677 <param name="remove_collision_energy" value=":"/> |
| 9913 <param name="remove_isolation_window_width" value=":"/> | 9678 <param name="remove_isolation_window_width" value=":"/> |
| 9914 <param name="select_zoom" value="false"/> | 9679 <param name="select_zoom" value="false"/> |
| 9915 <param name="select_mode" value=""/> | |
| 9916 <param name="select_activation" value=""/> | |
| 9917 <param name="select_collision_energy" value=":"/> | 9680 <param name="select_collision_energy" value=":"/> |
| 9918 <param name="select_isolation_window_width" value=":"/> | 9681 <param name="select_isolation_window_width" value=":"/> |
| 9919 <param name="select_polarity" value=""/> | |
| 9920 <section name="blackorwhitelist"> | 9682 <section name="blackorwhitelist"> |
| 9921 <param name="similarity_threshold" value="-1.0"/> | 9683 <param name="similarity_threshold" value="-1.0"/> |
| 9922 <param name="rt" value="0.01"/> | 9684 <param name="rt" value="0.01"/> |
| 9923 <param name="mz" value="0.01"/> | 9685 <param name="mz" value="0.01"/> |
| 9924 <param name="use_ppm_tolerance" value="false"/> | 9686 <param name="use_ppm_tolerance" value="false"/> |
| 10011 <param name="float_da" value="none"/> | 9773 <param name="float_da" value="none"/> |
| 10012 </section> | 9774 </section> |
| 10013 </section> | 9775 </section> |
| 10014 <section name="spectra"> | 9776 <section name="spectra"> |
| 10015 <param name="remove_zoom" value="false"/> | 9777 <param name="remove_zoom" value="false"/> |
| 10016 <param name="remove_mode" value=""/> | |
| 10017 <param name="remove_activation" value=""/> | |
| 10018 <param name="remove_collision_energy" value=":"/> | 9778 <param name="remove_collision_energy" value=":"/> |
| 10019 <param name="remove_isolation_window_width" value=":"/> | 9779 <param name="remove_isolation_window_width" value=":"/> |
| 10020 <param name="select_zoom" value="false"/> | 9780 <param name="select_zoom" value="false"/> |
| 10021 <param name="select_mode" value=""/> | |
| 10022 <param name="select_activation" value=""/> | |
| 10023 <param name="select_collision_energy" value=":"/> | 9781 <param name="select_collision_energy" value=":"/> |
| 10024 <param name="select_isolation_window_width" value=":"/> | 9782 <param name="select_isolation_window_width" value=":"/> |
| 10025 <param name="select_polarity" value=""/> | |
| 10026 <section name="blackorwhitelist"> | 9783 <section name="blackorwhitelist"> |
| 10027 <param name="similarity_threshold" value="-1.0"/> | 9784 <param name="similarity_threshold" value="-1.0"/> |
| 10028 <param name="rt" value="0.01"/> | 9785 <param name="rt" value="0.01"/> |
| 10029 <param name="mz" value="0.01"/> | 9786 <param name="mz" value="0.01"/> |
| 10030 <param name="use_ppm_tolerance" value="false"/> | 9787 <param name="use_ppm_tolerance" value="false"/> |
| 10117 <param name="float_da" value="none"/> | 9874 <param name="float_da" value="none"/> |
| 10118 </section> | 9875 </section> |
| 10119 </section> | 9876 </section> |
| 10120 <section name="spectra"> | 9877 <section name="spectra"> |
| 10121 <param name="remove_zoom" value="false"/> | 9878 <param name="remove_zoom" value="false"/> |
| 10122 <param name="remove_mode" value=""/> | |
| 10123 <param name="remove_activation" value=""/> | |
| 10124 <param name="remove_collision_energy" value=":"/> | 9879 <param name="remove_collision_energy" value=":"/> |
| 10125 <param name="remove_isolation_window_width" value=":"/> | 9880 <param name="remove_isolation_window_width" value=":"/> |
| 10126 <param name="select_zoom" value="false"/> | 9881 <param name="select_zoom" value="false"/> |
| 10127 <param name="select_mode" value=""/> | |
| 10128 <param name="select_activation" value=""/> | |
| 10129 <param name="select_collision_energy" value=":"/> | 9882 <param name="select_collision_energy" value=":"/> |
| 10130 <param name="select_isolation_window_width" value=":"/> | 9883 <param name="select_isolation_window_width" value=":"/> |
| 10131 <param name="select_polarity" value=""/> | |
| 10132 <section name="blackorwhitelist"> | 9884 <section name="blackorwhitelist"> |
| 10133 <param name="file" value="FileFilter_47_input_select.mzML"/> | 9885 <param name="file" value="FileFilter_47_input_select.mzML"/> |
| 10134 <param name="similarity_threshold" value="0.9"/> | 9886 <param name="similarity_threshold" value="0.9"/> |
| 10135 <param name="rt" value="0.01"/> | 9887 <param name="rt" value="0.01"/> |
| 10136 <param name="mz" value="0.01"/> | 9888 <param name="mz" value="0.01"/> |
| 10224 <param name="float_da" value="none"/> | 9976 <param name="float_da" value="none"/> |
| 10225 </section> | 9977 </section> |
| 10226 </section> | 9978 </section> |
| 10227 <section name="spectra"> | 9979 <section name="spectra"> |
| 10228 <param name="remove_zoom" value="false"/> | 9980 <param name="remove_zoom" value="false"/> |
| 10229 <param name="remove_mode" value=""/> | |
| 10230 <param name="remove_activation" value=""/> | |
| 10231 <param name="remove_collision_energy" value=":"/> | 9981 <param name="remove_collision_energy" value=":"/> |
| 10232 <param name="remove_isolation_window_width" value=":"/> | 9982 <param name="remove_isolation_window_width" value=":"/> |
| 10233 <param name="select_zoom" value="false"/> | 9983 <param name="select_zoom" value="false"/> |
| 10234 <param name="select_mode" value=""/> | |
| 10235 <param name="select_activation" value=""/> | |
| 10236 <param name="select_collision_energy" value=":"/> | 9984 <param name="select_collision_energy" value=":"/> |
| 10237 <param name="select_isolation_window_width" value=":"/> | 9985 <param name="select_isolation_window_width" value=":"/> |
| 10238 <param name="select_polarity" value=""/> | |
| 10239 <section name="blackorwhitelist"> | 9986 <section name="blackorwhitelist"> |
| 10240 <param name="file" value="FileFilter_47_input_select.mzML"/> | 9987 <param name="file" value="FileFilter_47_input_select.mzML"/> |
| 10241 <param name="similarity_threshold" value="0.9"/> | 9988 <param name="similarity_threshold" value="0.9"/> |
| 10242 <param name="rt" value="0.01"/> | 9989 <param name="rt" value="0.01"/> |
| 10243 <param name="mz" value="0.01"/> | 9990 <param name="mz" value="0.01"/> |
| 10331 <param name="float_da" value="slof"/> | 10078 <param name="float_da" value="slof"/> |
| 10332 </section> | 10079 </section> |
| 10333 </section> | 10080 </section> |
| 10334 <section name="spectra"> | 10081 <section name="spectra"> |
| 10335 <param name="remove_zoom" value="false"/> | 10082 <param name="remove_zoom" value="false"/> |
| 10336 <param name="remove_mode" value=""/> | |
| 10337 <param name="remove_activation" value=""/> | |
| 10338 <param name="remove_collision_energy" value=":"/> | 10083 <param name="remove_collision_energy" value=":"/> |
| 10339 <param name="remove_isolation_window_width" value=":"/> | 10084 <param name="remove_isolation_window_width" value=":"/> |
| 10340 <param name="select_zoom" value="false"/> | 10085 <param name="select_zoom" value="false"/> |
| 10341 <param name="select_mode" value=""/> | |
| 10342 <param name="select_activation" value=""/> | |
| 10343 <param name="select_collision_energy" value=":"/> | 10086 <param name="select_collision_energy" value=":"/> |
| 10344 <param name="select_isolation_window_width" value=":"/> | 10087 <param name="select_isolation_window_width" value=":"/> |
| 10345 <param name="select_polarity" value=""/> | |
| 10346 <section name="blackorwhitelist"> | 10088 <section name="blackorwhitelist"> |
| 10347 <param name="similarity_threshold" value="-1.0"/> | 10089 <param name="similarity_threshold" value="-1.0"/> |
| 10348 <param name="rt" value="0.01"/> | 10090 <param name="rt" value="0.01"/> |
| 10349 <param name="mz" value="0.01"/> | 10091 <param name="mz" value="0.01"/> |
| 10350 <param name="use_ppm_tolerance" value="false"/> | 10092 <param name="use_ppm_tolerance" value="false"/> |
| 12228 </section> | 11970 </section> |
| 12229 <section name="whitelist"> | 11971 <section name="whitelist"> |
| 12230 <param name="proteins" value="IDFilter_1_input.fas"/> | 11972 <param name="proteins" value="IDFilter_1_input.fas"/> |
| 12231 <param name="protein_accessions" value=""/> | 11973 <param name="protein_accessions" value=""/> |
| 12232 <param name="ignore_modifications" value="false"/> | 11974 <param name="ignore_modifications" value="false"/> |
| 12233 <param name="modifications" value=""/> | |
| 12234 </section> | 11975 </section> |
| 12235 <section name="blacklist"> | 11976 <section name="blacklist"> |
| 12236 <param name="protein_accessions" value=""/> | 11977 <param name="protein_accessions" value=""/> |
| 12237 <param name="ignore_modifications" value="false"/> | 11978 <param name="ignore_modifications" value="false"/> |
| 12238 <param name="modifications" value=""/> | |
| 12239 </section> | 11979 </section> |
| 12240 <section name="in_silico_digestion"> | 11980 <section name="in_silico_digestion"> |
| 12241 <param name="enzyme" value="Trypsin"/> | 11981 <param name="enzyme" value="Trypsin"/> |
| 12242 <param name="specificity" value="full"/> | 11982 <param name="specificity" value="full"/> |
| 12243 <param name="missed_cleavages" value="-1"/> | 11983 <param name="missed_cleavages" value="-1"/> |
| 12295 <param name="protgroup" value="0.0"/> | 12035 <param name="protgroup" value="0.0"/> |
| 12296 </section> | 12036 </section> |
| 12297 <section name="whitelist"> | 12037 <section name="whitelist"> |
| 12298 <param name="protein_accessions" value=""/> | 12038 <param name="protein_accessions" value=""/> |
| 12299 <param name="ignore_modifications" value="false"/> | 12039 <param name="ignore_modifications" value="false"/> |
| 12300 <param name="modifications" value=""/> | |
| 12301 </section> | 12040 </section> |
| 12302 <section name="blacklist"> | 12041 <section name="blacklist"> |
| 12303 <param name="protein_accessions" value=""/> | 12042 <param name="protein_accessions" value=""/> |
| 12304 <param name="peptides" value="IDFilter_3_2_input.idXML"/> | 12043 <param name="peptides" value="IDFilter_3_2_input.idXML"/> |
| 12305 <param name="ignore_modifications" value="false"/> | 12044 <param name="ignore_modifications" value="false"/> |
| 12306 <param name="modifications" value=""/> | |
| 12307 </section> | 12045 </section> |
| 12308 <section name="in_silico_digestion"> | 12046 <section name="in_silico_digestion"> |
| 12309 <param name="enzyme" value="Trypsin"/> | 12047 <param name="enzyme" value="Trypsin"/> |
| 12310 <param name="specificity" value="full"/> | 12048 <param name="specificity" value="full"/> |
| 12311 <param name="missed_cleavages" value="-1"/> | 12049 <param name="missed_cleavages" value="-1"/> |
| 12363 <param name="protgroup" value="0.0"/> | 12101 <param name="protgroup" value="0.0"/> |
| 12364 </section> | 12102 </section> |
| 12365 <section name="whitelist"> | 12103 <section name="whitelist"> |
| 12366 <param name="protein_accessions" value=""/> | 12104 <param name="protein_accessions" value=""/> |
| 12367 <param name="ignore_modifications" value="false"/> | 12105 <param name="ignore_modifications" value="false"/> |
| 12368 <param name="modifications" value=""/> | |
| 12369 </section> | 12106 </section> |
| 12370 <section name="blacklist"> | 12107 <section name="blacklist"> |
| 12371 <param name="protein_accessions" value=""/> | 12108 <param name="protein_accessions" value=""/> |
| 12372 <param name="ignore_modifications" value="false"/> | 12109 <param name="ignore_modifications" value="false"/> |
| 12373 <param name="modifications" value=""/> | |
| 12374 </section> | 12110 </section> |
| 12375 <section name="in_silico_digestion"> | 12111 <section name="in_silico_digestion"> |
| 12376 <param name="enzyme" value="Trypsin"/> | 12112 <param name="enzyme" value="Trypsin"/> |
| 12377 <param name="specificity" value="full"/> | 12113 <param name="specificity" value="full"/> |
| 12378 <param name="missed_cleavages" value="-1"/> | 12114 <param name="missed_cleavages" value="-1"/> |
| 12430 <param name="protgroup" value="0.0"/> | 12166 <param name="protgroup" value="0.0"/> |
| 12431 </section> | 12167 </section> |
| 12432 <section name="whitelist"> | 12168 <section name="whitelist"> |
| 12433 <param name="protein_accessions" value=""/> | 12169 <param name="protein_accessions" value=""/> |
| 12434 <param name="ignore_modifications" value="false"/> | 12170 <param name="ignore_modifications" value="false"/> |
| 12435 <param name="modifications" value=""/> | |
| 12436 </section> | 12171 </section> |
| 12437 <section name="blacklist"> | 12172 <section name="blacklist"> |
| 12438 <param name="protein_accessions" value=""/> | 12173 <param name="protein_accessions" value=""/> |
| 12439 <param name="ignore_modifications" value="false"/> | 12174 <param name="ignore_modifications" value="false"/> |
| 12440 <param name="modifications" value=""/> | |
| 12441 </section> | 12175 </section> |
| 12442 <section name="in_silico_digestion"> | 12176 <section name="in_silico_digestion"> |
| 12443 <param name="enzyme" value="Trypsin"/> | 12177 <param name="enzyme" value="Trypsin"/> |
| 12444 <param name="specificity" value="full"/> | 12178 <param name="specificity" value="full"/> |
| 12445 <param name="missed_cleavages" value="-1"/> | 12179 <param name="missed_cleavages" value="-1"/> |
| 12497 <param name="protgroup" value="0.0"/> | 12231 <param name="protgroup" value="0.0"/> |
| 12498 </section> | 12232 </section> |
| 12499 <section name="whitelist"> | 12233 <section name="whitelist"> |
| 12500 <param name="protein_accessions" value=""/> | 12234 <param name="protein_accessions" value=""/> |
| 12501 <param name="ignore_modifications" value="false"/> | 12235 <param name="ignore_modifications" value="false"/> |
| 12502 <param name="modifications" value=""/> | |
| 12503 </section> | 12236 </section> |
| 12504 <section name="blacklist"> | 12237 <section name="blacklist"> |
| 12505 <param name="protein_accessions" value=""/> | 12238 <param name="protein_accessions" value=""/> |
| 12506 <param name="ignore_modifications" value="false"/> | 12239 <param name="ignore_modifications" value="false"/> |
| 12507 <param name="modifications" value=""/> | |
| 12508 </section> | 12240 </section> |
| 12509 <section name="in_silico_digestion"> | 12241 <section name="in_silico_digestion"> |
| 12510 <param name="enzyme" value="Trypsin"/> | 12242 <param name="enzyme" value="Trypsin"/> |
| 12511 <param name="specificity" value="full"/> | 12243 <param name="specificity" value="full"/> |
| 12512 <param name="missed_cleavages" value="-1"/> | 12244 <param name="missed_cleavages" value="-1"/> |
| 12564 <param name="protgroup" value="0.0"/> | 12296 <param name="protgroup" value="0.0"/> |
| 12565 </section> | 12297 </section> |
| 12566 <section name="whitelist"> | 12298 <section name="whitelist"> |
| 12567 <param name="protein_accessions" value=""/> | 12299 <param name="protein_accessions" value=""/> |
| 12568 <param name="ignore_modifications" value="false"/> | 12300 <param name="ignore_modifications" value="false"/> |
| 12569 <param name="modifications" value=""/> | |
| 12570 </section> | 12301 </section> |
| 12571 <section name="blacklist"> | 12302 <section name="blacklist"> |
| 12572 <param name="protein_accessions" value=""/> | 12303 <param name="protein_accessions" value=""/> |
| 12573 <param name="ignore_modifications" value="false"/> | 12304 <param name="ignore_modifications" value="false"/> |
| 12574 <param name="modifications" value=""/> | |
| 12575 </section> | 12305 </section> |
| 12576 <section name="in_silico_digestion"> | 12306 <section name="in_silico_digestion"> |
| 12577 <param name="enzyme" value="Trypsin"/> | 12307 <param name="enzyme" value="Trypsin"/> |
| 12578 <param name="specificity" value="full"/> | 12308 <param name="specificity" value="full"/> |
| 12579 <param name="missed_cleavages" value="-1"/> | 12309 <param name="missed_cleavages" value="-1"/> |
| 12631 <param name="protgroup" value="0.0"/> | 12361 <param name="protgroup" value="0.0"/> |
| 12632 </section> | 12362 </section> |
| 12633 <section name="whitelist"> | 12363 <section name="whitelist"> |
| 12634 <param name="protein_accessions" value=""/> | 12364 <param name="protein_accessions" value=""/> |
| 12635 <param name="ignore_modifications" value="false"/> | 12365 <param name="ignore_modifications" value="false"/> |
| 12636 <param name="modifications" value=""/> | |
| 12637 </section> | 12366 </section> |
| 12638 <section name="blacklist"> | 12367 <section name="blacklist"> |
| 12639 <param name="protein_accessions" value=""/> | 12368 <param name="protein_accessions" value=""/> |
| 12640 <param name="ignore_modifications" value="false"/> | 12369 <param name="ignore_modifications" value="false"/> |
| 12641 <param name="modifications" value=""/> | |
| 12642 </section> | 12370 </section> |
| 12643 <section name="in_silico_digestion"> | 12371 <section name="in_silico_digestion"> |
| 12644 <param name="enzyme" value="Trypsin"/> | 12372 <param name="enzyme" value="Trypsin"/> |
| 12645 <param name="specificity" value="full"/> | 12373 <param name="specificity" value="full"/> |
| 12646 <param name="missed_cleavages" value="-1"/> | 12374 <param name="missed_cleavages" value="-1"/> |
| 12698 <param name="protgroup" value="0.0"/> | 12426 <param name="protgroup" value="0.0"/> |
| 12699 </section> | 12427 </section> |
| 12700 <section name="whitelist"> | 12428 <section name="whitelist"> |
| 12701 <param name="protein_accessions" value=""/> | 12429 <param name="protein_accessions" value=""/> |
| 12702 <param name="ignore_modifications" value="false"/> | 12430 <param name="ignore_modifications" value="false"/> |
| 12703 <param name="modifications" value=""/> | |
| 12704 </section> | 12431 </section> |
| 12705 <section name="blacklist"> | 12432 <section name="blacklist"> |
| 12706 <param name="protein_accessions" value=""/> | 12433 <param name="protein_accessions" value=""/> |
| 12707 <param name="ignore_modifications" value="false"/> | 12434 <param name="ignore_modifications" value="false"/> |
| 12708 <param name="modifications" value=""/> | |
| 12709 </section> | 12435 </section> |
| 12710 <section name="in_silico_digestion"> | 12436 <section name="in_silico_digestion"> |
| 12711 <param name="enzyme" value="Trypsin"/> | 12437 <param name="enzyme" value="Trypsin"/> |
| 12712 <param name="specificity" value="full"/> | 12438 <param name="specificity" value="full"/> |
| 12713 <param name="missed_cleavages" value="-1"/> | 12439 <param name="missed_cleavages" value="-1"/> |
| 12765 <param name="protgroup" value="0.0"/> | 12491 <param name="protgroup" value="0.0"/> |
| 12766 </section> | 12492 </section> |
| 12767 <section name="whitelist"> | 12493 <section name="whitelist"> |
| 12768 <param name="protein_accessions" value=""/> | 12494 <param name="protein_accessions" value=""/> |
| 12769 <param name="ignore_modifications" value="false"/> | 12495 <param name="ignore_modifications" value="false"/> |
| 12770 <param name="modifications" value=""/> | |
| 12771 </section> | 12496 </section> |
| 12772 <section name="blacklist"> | 12497 <section name="blacklist"> |
| 12773 <param name="protein_accessions" value=""/> | 12498 <param name="protein_accessions" value=""/> |
| 12774 <param name="ignore_modifications" value="false"/> | 12499 <param name="ignore_modifications" value="false"/> |
| 12775 <param name="modifications" value=""/> | |
| 12776 </section> | 12500 </section> |
| 12777 <section name="in_silico_digestion"> | 12501 <section name="in_silico_digestion"> |
| 12778 <param name="enzyme" value="Trypsin"/> | 12502 <param name="enzyme" value="Trypsin"/> |
| 12779 <param name="specificity" value="full"/> | 12503 <param name="specificity" value="full"/> |
| 12780 <param name="missed_cleavages" value="-1"/> | 12504 <param name="missed_cleavages" value="-1"/> |
| 12832 <param name="protgroup" value="0.0"/> | 12556 <param name="protgroup" value="0.0"/> |
| 12833 </section> | 12557 </section> |
| 12834 <section name="whitelist"> | 12558 <section name="whitelist"> |
| 12835 <param name="protein_accessions" value=""/> | 12559 <param name="protein_accessions" value=""/> |
| 12836 <param name="ignore_modifications" value="false"/> | 12560 <param name="ignore_modifications" value="false"/> |
| 12837 <param name="modifications" value=""/> | |
| 12838 </section> | 12561 </section> |
| 12839 <section name="blacklist"> | 12562 <section name="blacklist"> |
| 12840 <param name="protein_accessions" value=""/> | 12563 <param name="protein_accessions" value=""/> |
| 12841 <param name="ignore_modifications" value="false"/> | 12564 <param name="ignore_modifications" value="false"/> |
| 12842 <param name="modifications" value=""/> | |
| 12843 </section> | 12565 </section> |
| 12844 <section name="in_silico_digestion"> | 12566 <section name="in_silico_digestion"> |
| 12845 <param name="enzyme" value="Trypsin"/> | 12567 <param name="enzyme" value="Trypsin"/> |
| 12846 <param name="specificity" value="full"/> | 12568 <param name="specificity" value="full"/> |
| 12847 <param name="missed_cleavages" value="-1"/> | 12569 <param name="missed_cleavages" value="-1"/> |
| 12899 <param name="protgroup" value="0.0"/> | 12621 <param name="protgroup" value="0.0"/> |
| 12900 </section> | 12622 </section> |
| 12901 <section name="whitelist"> | 12623 <section name="whitelist"> |
| 12902 <param name="protein_accessions" value=""/> | 12624 <param name="protein_accessions" value=""/> |
| 12903 <param name="ignore_modifications" value="false"/> | 12625 <param name="ignore_modifications" value="false"/> |
| 12904 <param name="modifications" value=""/> | |
| 12905 </section> | 12626 </section> |
| 12906 <section name="blacklist"> | 12627 <section name="blacklist"> |
| 12907 <param name="protein_accessions" value=""/> | 12628 <param name="protein_accessions" value=""/> |
| 12908 <param name="ignore_modifications" value="false"/> | 12629 <param name="ignore_modifications" value="false"/> |
| 12909 <param name="modifications" value=""/> | |
| 12910 </section> | 12630 </section> |
| 12911 <section name="in_silico_digestion"> | 12631 <section name="in_silico_digestion"> |
| 12912 <param name="enzyme" value="Trypsin"/> | 12632 <param name="enzyme" value="Trypsin"/> |
| 12913 <param name="specificity" value="full"/> | 12633 <param name="specificity" value="full"/> |
| 12914 <param name="missed_cleavages" value="-1"/> | 12634 <param name="missed_cleavages" value="-1"/> |
| 12966 <param name="protgroup" value="0.0"/> | 12686 <param name="protgroup" value="0.0"/> |
| 12967 </section> | 12687 </section> |
| 12968 <section name="whitelist"> | 12688 <section name="whitelist"> |
| 12969 <param name="protein_accessions" value=""/> | 12689 <param name="protein_accessions" value=""/> |
| 12970 <param name="ignore_modifications" value="false"/> | 12690 <param name="ignore_modifications" value="false"/> |
| 12971 <param name="modifications" value=""/> | |
| 12972 </section> | 12691 </section> |
| 12973 <section name="blacklist"> | 12692 <section name="blacklist"> |
| 12974 <param name="protein_accessions" value=""/> | 12693 <param name="protein_accessions" value=""/> |
| 12975 <param name="ignore_modifications" value="false"/> | 12694 <param name="ignore_modifications" value="false"/> |
| 12976 <param name="modifications" value=""/> | |
| 12977 </section> | 12695 </section> |
| 12978 <section name="in_silico_digestion"> | 12696 <section name="in_silico_digestion"> |
| 12979 <param name="enzyme" value="Trypsin"/> | 12697 <param name="enzyme" value="Trypsin"/> |
| 12980 <param name="specificity" value="full"/> | 12698 <param name="specificity" value="full"/> |
| 12981 <param name="missed_cleavages" value="-1"/> | 12699 <param name="missed_cleavages" value="-1"/> |
| 13033 <param name="protgroup" value="0.0"/> | 12751 <param name="protgroup" value="0.0"/> |
| 13034 </section> | 12752 </section> |
| 13035 <section name="whitelist"> | 12753 <section name="whitelist"> |
| 13036 <param name="protein_accessions" value=""/> | 12754 <param name="protein_accessions" value=""/> |
| 13037 <param name="ignore_modifications" value="false"/> | 12755 <param name="ignore_modifications" value="false"/> |
| 13038 <param name="modifications" value=""/> | |
| 13039 </section> | 12756 </section> |
| 13040 <section name="blacklist"> | 12757 <section name="blacklist"> |
| 13041 <param name="protein_accessions" value=""/> | 12758 <param name="protein_accessions" value=""/> |
| 13042 <param name="ignore_modifications" value="false"/> | 12759 <param name="ignore_modifications" value="false"/> |
| 13043 <param name="modifications" value=""/> | |
| 13044 </section> | 12760 </section> |
| 13045 <section name="in_silico_digestion"> | 12761 <section name="in_silico_digestion"> |
| 13046 <param name="enzyme" value="Trypsin"/> | 12762 <param name="enzyme" value="Trypsin"/> |
| 13047 <param name="specificity" value="full"/> | 12763 <param name="specificity" value="full"/> |
| 13048 <param name="missed_cleavages" value="-1"/> | 12764 <param name="missed_cleavages" value="-1"/> |
| 13100 <param name="protgroup" value="0.0"/> | 12816 <param name="protgroup" value="0.0"/> |
| 13101 </section> | 12817 </section> |
| 13102 <section name="whitelist"> | 12818 <section name="whitelist"> |
| 13103 <param name="protein_accessions" value=""/> | 12819 <param name="protein_accessions" value=""/> |
| 13104 <param name="ignore_modifications" value="false"/> | 12820 <param name="ignore_modifications" value="false"/> |
| 13105 <param name="modifications" value=""/> | |
| 13106 </section> | 12821 </section> |
| 13107 <section name="blacklist"> | 12822 <section name="blacklist"> |
| 13108 <param name="protein_accessions" value=""/> | 12823 <param name="protein_accessions" value=""/> |
| 13109 <param name="ignore_modifications" value="false"/> | 12824 <param name="ignore_modifications" value="false"/> |
| 13110 <param name="modifications" value=""/> | |
| 13111 </section> | 12825 </section> |
| 13112 <section name="in_silico_digestion"> | 12826 <section name="in_silico_digestion"> |
| 13113 <param name="fasta" value="IDFilter_12_input.fasta"/> | 12827 <param name="fasta" value="IDFilter_12_input.fasta"/> |
| 13114 <param name="enzyme" value="Trypsin"/> | 12828 <param name="enzyme" value="Trypsin"/> |
| 13115 <param name="specificity" value="full"/> | 12829 <param name="specificity" value="full"/> |
| 13168 <param name="protgroup" value="0.0"/> | 12882 <param name="protgroup" value="0.0"/> |
| 13169 </section> | 12883 </section> |
| 13170 <section name="whitelist"> | 12884 <section name="whitelist"> |
| 13171 <param name="protein_accessions" value=""/> | 12885 <param name="protein_accessions" value=""/> |
| 13172 <param name="ignore_modifications" value="false"/> | 12886 <param name="ignore_modifications" value="false"/> |
| 13173 <param name="modifications" value=""/> | |
| 13174 </section> | 12887 </section> |
| 13175 <section name="blacklist"> | 12888 <section name="blacklist"> |
| 13176 <param name="protein_accessions" value=""/> | 12889 <param name="protein_accessions" value=""/> |
| 13177 <param name="ignore_modifications" value="false"/> | 12890 <param name="ignore_modifications" value="false"/> |
| 13178 <param name="modifications" value=""/> | |
| 13179 </section> | 12891 </section> |
| 13180 <section name="in_silico_digestion"> | 12892 <section name="in_silico_digestion"> |
| 13181 <param name="fasta" value="IDFilter_13_input.fasta"/> | 12893 <param name="fasta" value="IDFilter_13_input.fasta"/> |
| 13182 <param name="enzyme" value="Trypsin"/> | 12894 <param name="enzyme" value="Trypsin"/> |
| 13183 <param name="specificity" value="full"/> | 12895 <param name="specificity" value="full"/> |
| 13236 <param name="protgroup" value="0.0"/> | 12948 <param name="protgroup" value="0.0"/> |
| 13237 </section> | 12949 </section> |
| 13238 <section name="whitelist"> | 12950 <section name="whitelist"> |
| 13239 <param name="protein_accessions" value=""/> | 12951 <param name="protein_accessions" value=""/> |
| 13240 <param name="ignore_modifications" value="false"/> | 12952 <param name="ignore_modifications" value="false"/> |
| 13241 <param name="modifications" value=""/> | |
| 13242 </section> | 12953 </section> |
| 13243 <section name="blacklist"> | 12954 <section name="blacklist"> |
| 13244 <param name="protein_accessions" value=""/> | 12955 <param name="protein_accessions" value=""/> |
| 13245 <param name="ignore_modifications" value="false"/> | 12956 <param name="ignore_modifications" value="false"/> |
| 13246 <param name="modifications" value=""/> | |
| 13247 </section> | 12957 </section> |
| 13248 <section name="in_silico_digestion"> | 12958 <section name="in_silico_digestion"> |
| 13249 <param name="fasta" value="IDFilter_14_input.fasta"/> | 12959 <param name="fasta" value="IDFilter_14_input.fasta"/> |
| 13250 <param name="enzyme" value="Trypsin/P"/> | 12960 <param name="enzyme" value="Trypsin/P"/> |
| 13251 <param name="specificity" value="full"/> | 12961 <param name="specificity" value="full"/> |
| 13304 <param name="protgroup" value="0.0"/> | 13014 <param name="protgroup" value="0.0"/> |
| 13305 </section> | 13015 </section> |
| 13306 <section name="whitelist"> | 13016 <section name="whitelist"> |
| 13307 <param name="protein_accessions" value=""/> | 13017 <param name="protein_accessions" value=""/> |
| 13308 <param name="ignore_modifications" value="false"/> | 13018 <param name="ignore_modifications" value="false"/> |
| 13309 <param name="modifications" value=""/> | |
| 13310 </section> | 13019 </section> |
| 13311 <section name="blacklist"> | 13020 <section name="blacklist"> |
| 13312 <param name="protein_accessions" value=""/> | 13021 <param name="protein_accessions" value=""/> |
| 13313 <param name="ignore_modifications" value="false"/> | 13022 <param name="ignore_modifications" value="false"/> |
| 13314 <param name="modifications" value=""/> | |
| 13315 </section> | 13023 </section> |
| 13316 <section name="in_silico_digestion"> | 13024 <section name="in_silico_digestion"> |
| 13317 <param name="fasta" value="IDFilter_15_input.fasta"/> | 13025 <param name="fasta" value="IDFilter_15_input.fasta"/> |
| 13318 <param name="enzyme" value="Trypsin/P"/> | 13026 <param name="enzyme" value="Trypsin/P"/> |
| 13319 <param name="specificity" value="semi"/> | 13027 <param name="specificity" value="semi"/> |
| 13372 <param name="protgroup" value="0.0"/> | 13080 <param name="protgroup" value="0.0"/> |
| 13373 </section> | 13081 </section> |
| 13374 <section name="whitelist"> | 13082 <section name="whitelist"> |
| 13375 <param name="protein_accessions" value=""/> | 13083 <param name="protein_accessions" value=""/> |
| 13376 <param name="ignore_modifications" value="false"/> | 13084 <param name="ignore_modifications" value="false"/> |
| 13377 <param name="modifications" value=""/> | |
| 13378 </section> | 13085 </section> |
| 13379 <section name="blacklist"> | 13086 <section name="blacklist"> |
| 13380 <param name="protein_accessions" value=""/> | 13087 <param name="protein_accessions" value=""/> |
| 13381 <param name="ignore_modifications" value="false"/> | 13088 <param name="ignore_modifications" value="false"/> |
| 13382 <param name="modifications" value=""/> | |
| 13383 </section> | 13089 </section> |
| 13384 <section name="in_silico_digestion"> | 13090 <section name="in_silico_digestion"> |
| 13385 <param name="fasta" value="IDFilter_16_input.fasta"/> | 13091 <param name="fasta" value="IDFilter_16_input.fasta"/> |
| 13386 <param name="enzyme" value="Trypsin/P"/> | 13092 <param name="enzyme" value="Trypsin/P"/> |
| 13387 <param name="specificity" value="full"/> | 13093 <param name="specificity" value="full"/> |
| 13440 <param name="protgroup" value="0.0"/> | 13146 <param name="protgroup" value="0.0"/> |
| 13441 </section> | 13147 </section> |
| 13442 <section name="whitelist"> | 13148 <section name="whitelist"> |
| 13443 <param name="protein_accessions" value=""/> | 13149 <param name="protein_accessions" value=""/> |
| 13444 <param name="ignore_modifications" value="false"/> | 13150 <param name="ignore_modifications" value="false"/> |
| 13445 <param name="modifications" value=""/> | |
| 13446 </section> | 13151 </section> |
| 13447 <section name="blacklist"> | 13152 <section name="blacklist"> |
| 13448 <param name="protein_accessions" value=""/> | 13153 <param name="protein_accessions" value=""/> |
| 13449 <param name="ignore_modifications" value="false"/> | 13154 <param name="ignore_modifications" value="false"/> |
| 13450 <param name="modifications" value=""/> | |
| 13451 </section> | 13155 </section> |
| 13452 <section name="in_silico_digestion"> | 13156 <section name="in_silico_digestion"> |
| 13453 <param name="enzyme" value="Trypsin"/> | 13157 <param name="enzyme" value="Trypsin"/> |
| 13454 <param name="specificity" value="full"/> | 13158 <param name="specificity" value="full"/> |
| 13455 <param name="missed_cleavages" value="-1"/> | 13159 <param name="missed_cleavages" value="-1"/> |
| 13507 <param name="protgroup" value="0.0"/> | 13211 <param name="protgroup" value="0.0"/> |
| 13508 </section> | 13212 </section> |
| 13509 <section name="whitelist"> | 13213 <section name="whitelist"> |
| 13510 <param name="protein_accessions" value=""/> | 13214 <param name="protein_accessions" value=""/> |
| 13511 <param name="ignore_modifications" value="false"/> | 13215 <param name="ignore_modifications" value="false"/> |
| 13512 <param name="modifications" value=""/> | |
| 13513 </section> | 13216 </section> |
| 13514 <section name="blacklist"> | 13217 <section name="blacklist"> |
| 13515 <param name="protein_accessions" value=""/> | 13218 <param name="protein_accessions" value=""/> |
| 13516 <param name="ignore_modifications" value="false"/> | 13219 <param name="ignore_modifications" value="false"/> |
| 13517 <param name="modifications" value=""/> | |
| 13518 </section> | 13220 </section> |
| 13519 <section name="in_silico_digestion"> | 13221 <section name="in_silico_digestion"> |
| 13520 <param name="enzyme" value="Trypsin"/> | 13222 <param name="enzyme" value="Trypsin"/> |
| 13521 <param name="specificity" value="full"/> | 13223 <param name="specificity" value="full"/> |
| 13522 <param name="missed_cleavages" value="-1"/> | 13224 <param name="missed_cleavages" value="-1"/> |
| 13574 <param name="protgroup" value="0.0"/> | 13276 <param name="protgroup" value="0.0"/> |
| 13575 </section> | 13277 </section> |
| 13576 <section name="whitelist"> | 13278 <section name="whitelist"> |
| 13577 <param name="protein_accessions" value=""/> | 13279 <param name="protein_accessions" value=""/> |
| 13578 <param name="ignore_modifications" value="false"/> | 13280 <param name="ignore_modifications" value="false"/> |
| 13579 <param name="modifications" value=""/> | |
| 13580 </section> | 13281 </section> |
| 13581 <section name="blacklist"> | 13282 <section name="blacklist"> |
| 13582 <param name="protein_accessions" value=""/> | 13283 <param name="protein_accessions" value=""/> |
| 13583 <param name="ignore_modifications" value="false"/> | 13284 <param name="ignore_modifications" value="false"/> |
| 13584 <param name="modifications" value=""/> | |
| 13585 </section> | 13285 </section> |
| 13586 <section name="in_silico_digestion"> | 13286 <section name="in_silico_digestion"> |
| 13587 <param name="enzyme" value="Trypsin"/> | 13287 <param name="enzyme" value="Trypsin"/> |
| 13588 <param name="specificity" value="full"/> | 13288 <param name="specificity" value="full"/> |
| 13589 <param name="missed_cleavages" value="-1"/> | 13289 <param name="missed_cleavages" value="-1"/> |
| 13641 <param name="protgroup" value="0.0"/> | 13341 <param name="protgroup" value="0.0"/> |
| 13642 </section> | 13342 </section> |
| 13643 <section name="whitelist"> | 13343 <section name="whitelist"> |
| 13644 <param name="protein_accessions" value=""/> | 13344 <param name="protein_accessions" value=""/> |
| 13645 <param name="ignore_modifications" value="false"/> | 13345 <param name="ignore_modifications" value="false"/> |
| 13646 <param name="modifications" value=""/> | |
| 13647 </section> | 13346 </section> |
| 13648 <section name="blacklist"> | 13347 <section name="blacklist"> |
| 13649 <param name="protein_accessions" value=""/> | 13348 <param name="protein_accessions" value=""/> |
| 13650 <param name="ignore_modifications" value="false"/> | 13349 <param name="ignore_modifications" value="false"/> |
| 13651 <param name="modifications" value=""/> | |
| 13652 </section> | 13350 </section> |
| 13653 <section name="in_silico_digestion"> | 13351 <section name="in_silico_digestion"> |
| 13654 <param name="enzyme" value="Trypsin"/> | 13352 <param name="enzyme" value="Trypsin"/> |
| 13655 <param name="specificity" value="full"/> | 13353 <param name="specificity" value="full"/> |
| 13656 <param name="missed_cleavages" value="-1"/> | 13354 <param name="missed_cleavages" value="-1"/> |
| 13708 <param name="protgroup" value="0.0"/> | 13406 <param name="protgroup" value="0.0"/> |
| 13709 </section> | 13407 </section> |
| 13710 <section name="whitelist"> | 13408 <section name="whitelist"> |
| 13711 <param name="protein_accessions" value=""/> | 13409 <param name="protein_accessions" value=""/> |
| 13712 <param name="ignore_modifications" value="false"/> | 13410 <param name="ignore_modifications" value="false"/> |
| 13713 <param name="modifications" value=""/> | |
| 13714 </section> | 13411 </section> |
| 13715 <section name="blacklist"> | 13412 <section name="blacklist"> |
| 13716 <param name="protein_accessions" value=""/> | 13413 <param name="protein_accessions" value=""/> |
| 13717 <param name="ignore_modifications" value="false"/> | 13414 <param name="ignore_modifications" value="false"/> |
| 13718 <param name="modifications" value=""/> | |
| 13719 </section> | 13415 </section> |
| 13720 <section name="in_silico_digestion"> | 13416 <section name="in_silico_digestion"> |
| 13721 <param name="enzyme" value="Trypsin"/> | 13417 <param name="enzyme" value="Trypsin"/> |
| 13722 <param name="specificity" value="full"/> | 13418 <param name="specificity" value="full"/> |
| 13723 <param name="missed_cleavages" value="-1"/> | 13419 <param name="missed_cleavages" value="-1"/> |
| 13775 <param name="protgroup" value="0.0"/> | 13471 <param name="protgroup" value="0.0"/> |
| 13776 </section> | 13472 </section> |
| 13777 <section name="whitelist"> | 13473 <section name="whitelist"> |
| 13778 <param name="protein_accessions" value=""/> | 13474 <param name="protein_accessions" value=""/> |
| 13779 <param name="ignore_modifications" value="false"/> | 13475 <param name="ignore_modifications" value="false"/> |
| 13780 <param name="modifications" value=""/> | |
| 13781 </section> | 13476 </section> |
| 13782 <section name="blacklist"> | 13477 <section name="blacklist"> |
| 13783 <param name="protein_accessions" value=""/> | 13478 <param name="protein_accessions" value=""/> |
| 13784 <param name="ignore_modifications" value="false"/> | 13479 <param name="ignore_modifications" value="false"/> |
| 13785 <param name="modifications" value=""/> | |
| 13786 </section> | 13480 </section> |
| 13787 <section name="in_silico_digestion"> | 13481 <section name="in_silico_digestion"> |
| 13788 <param name="enzyme" value="Trypsin"/> | 13482 <param name="enzyme" value="Trypsin"/> |
| 13789 <param name="specificity" value="full"/> | 13483 <param name="specificity" value="full"/> |
| 13790 <param name="missed_cleavages" value="-1"/> | 13484 <param name="missed_cleavages" value="-1"/> |
| 13842 <param name="protgroup" value="0.0"/> | 13536 <param name="protgroup" value="0.0"/> |
| 13843 </section> | 13537 </section> |
| 13844 <section name="whitelist"> | 13538 <section name="whitelist"> |
| 13845 <param name="protein_accessions" value=""Q9HP81""/> | 13539 <param name="protein_accessions" value=""Q9HP81""/> |
| 13846 <param name="ignore_modifications" value="false"/> | 13540 <param name="ignore_modifications" value="false"/> |
| 13847 <param name="modifications" value=""/> | |
| 13848 </section> | 13541 </section> |
| 13849 <section name="blacklist"> | 13542 <section name="blacklist"> |
| 13850 <param name="protein_accessions" value=""/> | 13543 <param name="protein_accessions" value=""/> |
| 13851 <param name="ignore_modifications" value="false"/> | 13544 <param name="ignore_modifications" value="false"/> |
| 13852 <param name="modifications" value=""/> | |
| 13853 </section> | 13545 </section> |
| 13854 <section name="in_silico_digestion"> | 13546 <section name="in_silico_digestion"> |
| 13855 <param name="enzyme" value="Trypsin"/> | 13547 <param name="enzyme" value="Trypsin"/> |
| 13856 <param name="specificity" value="full"/> | 13548 <param name="specificity" value="full"/> |
| 13857 <param name="missed_cleavages" value="-1"/> | 13549 <param name="missed_cleavages" value="-1"/> |
| 13909 <param name="protgroup" value="0.99"/> | 13601 <param name="protgroup" value="0.99"/> |
| 13910 </section> | 13602 </section> |
| 13911 <section name="whitelist"> | 13603 <section name="whitelist"> |
| 13912 <param name="protein_accessions" value=""/> | 13604 <param name="protein_accessions" value=""/> |
| 13913 <param name="ignore_modifications" value="false"/> | 13605 <param name="ignore_modifications" value="false"/> |
| 13914 <param name="modifications" value=""/> | |
| 13915 </section> | 13606 </section> |
| 13916 <section name="blacklist"> | 13607 <section name="blacklist"> |
| 13917 <param name="protein_accessions" value=""/> | 13608 <param name="protein_accessions" value=""/> |
| 13918 <param name="ignore_modifications" value="false"/> | 13609 <param name="ignore_modifications" value="false"/> |
| 13919 <param name="modifications" value=""/> | |
| 13920 </section> | 13610 </section> |
| 13921 <section name="in_silico_digestion"> | 13611 <section name="in_silico_digestion"> |
| 13922 <param name="enzyme" value="Trypsin"/> | 13612 <param name="enzyme" value="Trypsin"/> |
| 13923 <param name="specificity" value="full"/> | 13613 <param name="specificity" value="full"/> |
| 13924 <param name="missed_cleavages" value="-1"/> | 13614 <param name="missed_cleavages" value="-1"/> |
| 14646 </conditional> | 14336 </conditional> |
| 14647 <param name="type" value="itraq4plex"/> | 14337 <param name="type" value="itraq4plex"/> |
| 14648 <param name="in" value="IsobaricAnalyzer_input_1.mzML"/> | 14338 <param name="in" value="IsobaricAnalyzer_input_1.mzML"/> |
| 14649 <output name="out" file="IsobaricAnalyzer_output_1.consensusXML" compare="sim_size" delta="5700" ftype="consensusxml"/> | 14339 <output name="out" file="IsobaricAnalyzer_output_1.consensusXML" compare="sim_size" delta="5700" ftype="consensusxml"/> |
| 14650 <section name="extraction"> | 14340 <section name="extraction"> |
| 14651 <param name="select_activation" value=""/> | 14341 <param name="select_activation" value="High-energy collision-induced dissociation"/> |
| 14652 <param name="reporter_mass_shift" value="0.1"/> | 14342 <param name="reporter_mass_shift" value="0.1"/> |
| 14653 <param name="min_precursor_intensity" value="1.0"/> | 14343 <param name="min_precursor_intensity" value="1.0"/> |
| 14654 <param name="keep_unannotated_precursor" value="true"/> | 14344 <param name="keep_unannotated_precursor" value="true"/> |
| 14655 <param name="min_reporter_intensity" value="0.0"/> | 14345 <param name="min_reporter_intensity" value="0.0"/> |
| 14656 <param name="discard_low_intensity_quantifications" value="false"/> | 14346 <param name="discard_low_intensity_quantifications" value="false"/> |
| 15137 </section> | 14827 </section> |
| 15138 <section name="model"> | 14828 <section name="model"> |
| 15139 <param name="type" value="b_spline"/> | 14829 <param name="type" value="b_spline"/> |
| 15140 <section name="linear"> | 14830 <section name="linear"> |
| 15141 <param name="symmetric_regression" value="false"/> | 14831 <param name="symmetric_regression" value="false"/> |
| 15142 <param name="x_weight" value=""/> | |
| 15143 <param name="y_weight" value=""/> | |
| 15144 <param name="x_datum_min" value="1e-15"/> | 14832 <param name="x_datum_min" value="1e-15"/> |
| 15145 <param name="x_datum_max" value="1000000000000000.0"/> | 14833 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15146 <param name="y_datum_min" value="1e-15"/> | 14834 <param name="y_datum_min" value="1e-15"/> |
| 15147 <param name="y_datum_max" value="1000000000000000.0"/> | 14835 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15148 </section> | 14836 </section> |
| 15193 </section> | 14881 </section> |
| 15194 <section name="model"> | 14882 <section name="model"> |
| 15195 <param name="type" value="b_spline"/> | 14883 <param name="type" value="b_spline"/> |
| 15196 <section name="linear"> | 14884 <section name="linear"> |
| 15197 <param name="symmetric_regression" value="false"/> | 14885 <param name="symmetric_regression" value="false"/> |
| 15198 <param name="x_weight" value=""/> | |
| 15199 <param name="y_weight" value=""/> | |
| 15200 <param name="x_datum_min" value="1e-15"/> | 14886 <param name="x_datum_min" value="1e-15"/> |
| 15201 <param name="x_datum_max" value="1000000000000000.0"/> | 14887 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15202 <param name="y_datum_min" value="1e-15"/> | 14888 <param name="y_datum_min" value="1e-15"/> |
| 15203 <param name="y_datum_max" value="1000000000000000.0"/> | 14889 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15204 </section> | 14890 </section> |
| 15248 </section> | 14934 </section> |
| 15249 <section name="model"> | 14935 <section name="model"> |
| 15250 <param name="type" value="b_spline"/> | 14936 <param name="type" value="b_spline"/> |
| 15251 <section name="linear"> | 14937 <section name="linear"> |
| 15252 <param name="symmetric_regression" value="false"/> | 14938 <param name="symmetric_regression" value="false"/> |
| 15253 <param name="x_weight" value=""/> | |
| 15254 <param name="y_weight" value=""/> | |
| 15255 <param name="x_datum_min" value="1e-15"/> | 14939 <param name="x_datum_min" value="1e-15"/> |
| 15256 <param name="x_datum_max" value="1000000000000000.0"/> | 14940 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15257 <param name="y_datum_min" value="1e-15"/> | 14941 <param name="y_datum_min" value="1e-15"/> |
| 15258 <param name="y_datum_max" value="1000000000000000.0"/> | 14942 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15259 </section> | 14943 </section> |
| 15303 </section> | 14987 </section> |
| 15304 <section name="model"> | 14988 <section name="model"> |
| 15305 <param name="type" value="b_spline"/> | 14989 <param name="type" value="b_spline"/> |
| 15306 <section name="linear"> | 14990 <section name="linear"> |
| 15307 <param name="symmetric_regression" value="false"/> | 14991 <param name="symmetric_regression" value="false"/> |
| 15308 <param name="x_weight" value=""/> | |
| 15309 <param name="y_weight" value=""/> | |
| 15310 <param name="x_datum_min" value="1e-15"/> | 14992 <param name="x_datum_min" value="1e-15"/> |
| 15311 <param name="x_datum_max" value="1000000000000000.0"/> | 14993 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15312 <param name="y_datum_min" value="1e-15"/> | 14994 <param name="y_datum_min" value="1e-15"/> |
| 15313 <param name="y_datum_max" value="1000000000000000.0"/> | 14995 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15314 </section> | 14996 </section> |
| 15358 </section> | 15040 </section> |
| 15359 <section name="model"> | 15041 <section name="model"> |
| 15360 <param name="type" value="b_spline"/> | 15042 <param name="type" value="b_spline"/> |
| 15361 <section name="linear"> | 15043 <section name="linear"> |
| 15362 <param name="symmetric_regression" value="false"/> | 15044 <param name="symmetric_regression" value="false"/> |
| 15363 <param name="x_weight" value=""/> | |
| 15364 <param name="y_weight" value=""/> | |
| 15365 <param name="x_datum_min" value="1e-15"/> | 15045 <param name="x_datum_min" value="1e-15"/> |
| 15366 <param name="x_datum_max" value="1000000000000000.0"/> | 15046 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15367 <param name="y_datum_min" value="1e-15"/> | 15047 <param name="y_datum_min" value="1e-15"/> |
| 15368 <param name="y_datum_max" value="1000000000000000.0"/> | 15048 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15369 </section> | 15049 </section> |
| 15414 </section> | 15094 </section> |
| 15415 <section name="model"> | 15095 <section name="model"> |
| 15416 <param name="type" value="b_spline"/> | 15096 <param name="type" value="b_spline"/> |
| 15417 <section name="linear"> | 15097 <section name="linear"> |
| 15418 <param name="symmetric_regression" value="false"/> | 15098 <param name="symmetric_regression" value="false"/> |
| 15419 <param name="x_weight" value=""/> | |
| 15420 <param name="y_weight" value=""/> | |
| 15421 <param name="x_datum_min" value="1e-15"/> | 15099 <param name="x_datum_min" value="1e-15"/> |
| 15422 <param name="x_datum_max" value="1000000000000000.0"/> | 15100 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15423 <param name="y_datum_min" value="1e-15"/> | 15101 <param name="y_datum_min" value="1e-15"/> |
| 15424 <param name="y_datum_max" value="1000000000000000.0"/> | 15102 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15425 </section> | 15103 </section> |
| 15471 </section> | 15149 </section> |
| 15472 <section name="model"> | 15150 <section name="model"> |
| 15473 <param name="type" value="b_spline"/> | 15151 <param name="type" value="b_spline"/> |
| 15474 <section name="linear"> | 15152 <section name="linear"> |
| 15475 <param name="symmetric_regression" value="false"/> | 15153 <param name="symmetric_regression" value="false"/> |
| 15476 <param name="x_weight" value=""/> | |
| 15477 <param name="y_weight" value=""/> | |
| 15478 <param name="x_datum_min" value="1e-15"/> | 15154 <param name="x_datum_min" value="1e-15"/> |
| 15479 <param name="x_datum_max" value="1000000000000000.0"/> | 15155 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15480 <param name="y_datum_min" value="1e-15"/> | 15156 <param name="y_datum_min" value="1e-15"/> |
| 15481 <param name="y_datum_max" value="1000000000000000.0"/> | 15157 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15482 </section> | 15158 </section> |
| 15746 </section> | 15422 </section> |
| 15747 <section name="model"> | 15423 <section name="model"> |
| 15748 <param name="type" value="interpolated"/> | 15424 <param name="type" value="interpolated"/> |
| 15749 <section name="linear"> | 15425 <section name="linear"> |
| 15750 <param name="symmetric_regression" value="false"/> | 15426 <param name="symmetric_regression" value="false"/> |
| 15751 <param name="x_weight" value=""/> | |
| 15752 <param name="y_weight" value=""/> | |
| 15753 <param name="x_datum_min" value="1e-15"/> | 15427 <param name="x_datum_min" value="1e-15"/> |
| 15754 <param name="x_datum_max" value="1000000000000000.0"/> | 15428 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15755 <param name="y_datum_min" value="1e-15"/> | 15429 <param name="y_datum_min" value="1e-15"/> |
| 15756 <param name="y_datum_max" value="1000000000000000.0"/> | 15430 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15757 </section> | 15431 </section> |
| 15794 <param name="model_type" value="b_spline"/> | 15468 <param name="model_type" value="b_spline"/> |
| 15795 <section name="model"> | 15469 <section name="model"> |
| 15796 <param name="type" value="b_spline"/> | 15470 <param name="type" value="b_spline"/> |
| 15797 <section name="linear"> | 15471 <section name="linear"> |
| 15798 <param name="symmetric_regression" value="false"/> | 15472 <param name="symmetric_regression" value="false"/> |
| 15799 <param name="x_weight" value=""/> | |
| 15800 <param name="y_weight" value=""/> | |
| 15801 <param name="x_datum_min" value="1e-15"/> | 15473 <param name="x_datum_min" value="1e-15"/> |
| 15802 <param name="x_datum_max" value="1000000000000000.0"/> | 15474 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15803 <param name="y_datum_min" value="1e-15"/> | 15475 <param name="y_datum_min" value="1e-15"/> |
| 15804 <param name="y_datum_max" value="1000000000000000.0"/> | 15476 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15805 </section> | 15477 </section> |
| 15849 <param name="model_type" value="b_spline"/> | 15521 <param name="model_type" value="b_spline"/> |
| 15850 <section name="model"> | 15522 <section name="model"> |
| 15851 <param name="type" value="b_spline"/> | 15523 <param name="type" value="b_spline"/> |
| 15852 <section name="linear"> | 15524 <section name="linear"> |
| 15853 <param name="symmetric_regression" value="false"/> | 15525 <param name="symmetric_regression" value="false"/> |
| 15854 <param name="x_weight" value=""/> | |
| 15855 <param name="y_weight" value=""/> | |
| 15856 <param name="x_datum_min" value="1e-15"/> | 15526 <param name="x_datum_min" value="1e-15"/> |
| 15857 <param name="x_datum_max" value="1000000000000000.0"/> | 15527 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15858 <param name="y_datum_min" value="1e-15"/> | 15528 <param name="y_datum_min" value="1e-15"/> |
| 15859 <param name="y_datum_max" value="1000000000000000.0"/> | 15529 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15860 </section> | 15530 </section> |
| 15904 <param name="model_type" value="b_spline"/> | 15574 <param name="model_type" value="b_spline"/> |
| 15905 <section name="model"> | 15575 <section name="model"> |
| 15906 <param name="type" value="b_spline"/> | 15576 <param name="type" value="b_spline"/> |
| 15907 <section name="linear"> | 15577 <section name="linear"> |
| 15908 <param name="symmetric_regression" value="false"/> | 15578 <param name="symmetric_regression" value="false"/> |
| 15909 <param name="x_weight" value=""/> | |
| 15910 <param name="y_weight" value=""/> | |
| 15911 <param name="x_datum_min" value="1e-15"/> | 15579 <param name="x_datum_min" value="1e-15"/> |
| 15912 <param name="x_datum_max" value="1000000000000000.0"/> | 15580 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15913 <param name="y_datum_min" value="1e-15"/> | 15581 <param name="y_datum_min" value="1e-15"/> |
| 15914 <param name="y_datum_max" value="1000000000000000.0"/> | 15582 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15915 </section> | 15583 </section> |
| 15979 <param name="store_original_rt" value="false"/> | 15647 <param name="store_original_rt" value="false"/> |
| 15980 <section name="model"> | 15648 <section name="model"> |
| 15981 <param name="type" value="none"/> | 15649 <param name="type" value="none"/> |
| 15982 <section name="linear"> | 15650 <section name="linear"> |
| 15983 <param name="symmetric_regression" value="false"/> | 15651 <param name="symmetric_regression" value="false"/> |
| 15984 <param name="x_weight" value=""/> | |
| 15985 <param name="y_weight" value=""/> | |
| 15986 <param name="x_datum_min" value="1e-15"/> | 15652 <param name="x_datum_min" value="1e-15"/> |
| 15987 <param name="x_datum_max" value="1000000000000000.0"/> | 15653 <param name="x_datum_max" value="1000000000000000.0"/> |
| 15988 <param name="y_datum_min" value="1e-15"/> | 15654 <param name="y_datum_min" value="1e-15"/> |
| 15989 <param name="y_datum_max" value="1000000000000000.0"/> | 15655 <param name="y_datum_max" value="1000000000000000.0"/> |
| 15990 </section> | 15656 </section> |
| 16026 <param name="store_original_rt" value="false"/> | 15692 <param name="store_original_rt" value="false"/> |
| 16027 <section name="model"> | 15693 <section name="model"> |
| 16028 <param name="type" value="none"/> | 15694 <param name="type" value="none"/> |
| 16029 <section name="linear"> | 15695 <section name="linear"> |
| 16030 <param name="symmetric_regression" value="false"/> | 15696 <param name="symmetric_regression" value="false"/> |
| 16031 <param name="x_weight" value=""/> | |
| 16032 <param name="y_weight" value=""/> | |
| 16033 <param name="x_datum_min" value="1e-15"/> | 15697 <param name="x_datum_min" value="1e-15"/> |
| 16034 <param name="x_datum_max" value="1000000000000000.0"/> | 15698 <param name="x_datum_max" value="1000000000000000.0"/> |
| 16035 <param name="y_datum_min" value="1e-15"/> | 15699 <param name="y_datum_min" value="1e-15"/> |
| 16036 <param name="y_datum_max" value="1000000000000000.0"/> | 15700 <param name="y_datum_max" value="1000000000000000.0"/> |
| 16037 </section> | 15701 </section> |
| 16072 <param name="store_original_rt" value="false"/> | 15736 <param name="store_original_rt" value="false"/> |
| 16073 <section name="model"> | 15737 <section name="model"> |
| 16074 <param name="type" value="none"/> | 15738 <param name="type" value="none"/> |
| 16075 <section name="linear"> | 15739 <section name="linear"> |
| 16076 <param name="symmetric_regression" value="false"/> | 15740 <param name="symmetric_regression" value="false"/> |
| 16077 <param name="x_weight" value=""/> | |
| 16078 <param name="y_weight" value=""/> | |
| 16079 <param name="x_datum_min" value="1e-15"/> | 15741 <param name="x_datum_min" value="1e-15"/> |
| 16080 <param name="x_datum_max" value="1000000000000000.0"/> | 15742 <param name="x_datum_max" value="1000000000000000.0"/> |
| 16081 <param name="y_datum_min" value="1e-15"/> | 15743 <param name="y_datum_min" value="1e-15"/> |
| 16082 <param name="y_datum_max" value="1000000000000000.0"/> | 15744 <param name="y_datum_max" value="1000000000000000.0"/> |
| 16083 </section> | 15745 </section> |
| 16119 <param name="store_original_rt" value="false"/> | 15781 <param name="store_original_rt" value="false"/> |
| 16120 <section name="model"> | 15782 <section name="model"> |
| 16121 <param name="type" value="none"/> | 15783 <param name="type" value="none"/> |
| 16122 <section name="linear"> | 15784 <section name="linear"> |
| 16123 <param name="symmetric_regression" value="false"/> | 15785 <param name="symmetric_regression" value="false"/> |
| 16124 <param name="x_weight" value=""/> | |
| 16125 <param name="y_weight" value=""/> | |
| 16126 <param name="x_datum_min" value="1e-15"/> | 15786 <param name="x_datum_min" value="1e-15"/> |
| 16127 <param name="x_datum_max" value="1000000000000000.0"/> | 15787 <param name="x_datum_max" value="1000000000000000.0"/> |
| 16128 <param name="y_datum_min" value="1e-15"/> | 15788 <param name="y_datum_min" value="1e-15"/> |
| 16129 <param name="y_datum_max" value="1000000000000000.0"/> | 15789 <param name="y_datum_max" value="1000000000000000.0"/> |
| 16130 </section> | 15790 </section> |
| 16166 <param name="store_original_rt" value="false"/> | 15826 <param name="store_original_rt" value="false"/> |
| 16167 <section name="model"> | 15827 <section name="model"> |
| 16168 <param name="type" value="none"/> | 15828 <param name="type" value="none"/> |
| 16169 <section name="linear"> | 15829 <section name="linear"> |
| 16170 <param name="symmetric_regression" value="false"/> | 15830 <param name="symmetric_regression" value="false"/> |
| 16171 <param name="x_weight" value=""/> | |
| 16172 <param name="y_weight" value=""/> | |
| 16173 <param name="x_datum_min" value="1e-15"/> | 15831 <param name="x_datum_min" value="1e-15"/> |
| 16174 <param name="x_datum_max" value="1000000000000000.0"/> | 15832 <param name="x_datum_max" value="1000000000000000.0"/> |
| 16175 <param name="y_datum_min" value="1e-15"/> | 15833 <param name="y_datum_min" value="1e-15"/> |
| 16176 <param name="y_datum_max" value="1000000000000000.0"/> | 15834 <param name="y_datum_max" value="1000000000000000.0"/> |
| 16177 </section> | 15835 </section> |
| 16213 <param name="store_original_rt" value="true"/> | 15871 <param name="store_original_rt" value="true"/> |
| 16214 <section name="model"> | 15872 <section name="model"> |
| 16215 <param name="type" value="none"/> | 15873 <param name="type" value="none"/> |
| 16216 <section name="linear"> | 15874 <section name="linear"> |
| 16217 <param name="symmetric_regression" value="false"/> | 15875 <param name="symmetric_regression" value="false"/> |
| 16218 <param name="x_weight" value=""/> | |
| 16219 <param name="y_weight" value=""/> | |
| 16220 <param name="x_datum_min" value="1e-15"/> | 15876 <param name="x_datum_min" value="1e-15"/> |
| 16221 <param name="x_datum_max" value="1000000000000000.0"/> | 15877 <param name="x_datum_max" value="1000000000000000.0"/> |
| 16222 <param name="y_datum_min" value="1e-15"/> | 15878 <param name="y_datum_min" value="1e-15"/> |
| 16223 <param name="y_datum_max" value="1000000000000000.0"/> | 15879 <param name="y_datum_max" value="1000000000000000.0"/> |
| 16224 </section> | 15880 </section> |
| 16271 <param name="precursor_error_units" value="Da"/> | 15927 <param name="precursor_error_units" value="Da"/> |
| 16272 <param name="fragment_mass_tolerance" value="0.3"/> | 15928 <param name="fragment_mass_tolerance" value="0.3"/> |
| 16273 <param name="fragment_error_units" value="Da"/> | 15929 <param name="fragment_error_units" value="Da"/> |
| 16274 <param name="charges" value="1,2,3"/> | 15930 <param name="charges" value="1,2,3"/> |
| 16275 <param name="taxonomy" value="All entries"/> | 15931 <param name="taxonomy" value="All entries"/> |
| 16276 <param name="fixed_modifications" value=""/> | |
| 16277 <param name="variable_modifications" value=""/> | |
| 16278 <param name="special_modifications" value="Cation:Na (DE),Deamidated (NQ),Oxidation (HW),Phospho (ST),Sulfo (ST)"/> | 15932 <param name="special_modifications" value="Cation:Na (DE),Deamidated (NQ),Oxidation (HW),Phospho (ST),Sulfo (ST)"/> |
| 16279 <param name="mass_type" value="monoisotopic"/> | 15933 <param name="mass_type" value="monoisotopic"/> |
| 16280 <param name="number_of_hits" value="0"/> | 15934 <param name="number_of_hits" value="0"/> |
| 16281 <param name="skip_spectrum_charges" value="false"/> | 15935 <param name="skip_spectrum_charges" value="false"/> |
| 16282 <param name="search_title" value="OpenMS_search"/> | 15936 <param name="search_title" value="OpenMS_search"/> |
| 16284 <param name="email" value="openmsjenkins@gmail.com"/> | 15938 <param name="email" value="openmsjenkins@gmail.com"/> |
| 16285 </section> | 15939 </section> |
| 16286 <section name="Mascot_server"> | 15940 <section name="Mascot_server"> |
| 16287 <param name="hostname" value="www.matrixscience.com"/> | 15941 <param name="hostname" value="www.matrixscience.com"/> |
| 16288 <param name="host_port" value="80"/> | 15942 <param name="host_port" value="80"/> |
| 16289 <param name="server_path" value=""/> | 15943 <param name="server_path" value="mascot"/> |
| 16290 <param name="timeout" value="1500"/> | 15944 <param name="timeout" value="1500"/> |
| 16291 <param name="boundary" value="GZWgAaYKjHFeUaLOLEIOMq"/> | 15945 <param name="boundary" value="GZWgAaYKjHFeUaLOLEIOMq"/> |
| 16292 <param name="use_proxy" value="false"/> | 15946 <param name="use_proxy" value="false"/> |
| 16293 <param name="proxy_host" value=""/> | 15947 <param name="proxy_host" value=""/> |
| 16294 <param name="proxy_port" value="0"/> | 15948 <param name="proxy_port" value="0"/> |
| 16816 <param name="matches_per_spec" value="1"/> | 16470 <param name="matches_per_spec" value="1"/> |
| 16817 <param name="add_features" value="false"/> | 16471 <param name="add_features" value="false"/> |
| 16818 <param name="max_mods" value="2"/> | 16472 <param name="max_mods" value="2"/> |
| 16819 <param name="max_missed_cleavages" value="-1"/> | 16473 <param name="max_missed_cleavages" value="-1"/> |
| 16820 <param name="tasks" value="0"/> | 16474 <param name="tasks" value="0"/> |
| 16821 <param name="fixed_modifications" value=""/> | 16475 <param name="fixed_modifications" value="Carbamidomethyl (C)"/> |
| 16822 <param name="variable_modifications" value="Oxidation (M)"/> | 16476 <param name="variable_modifications" value="Oxidation (M)"/> |
| 16823 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG,out_FLAG,mzid_out_FLAG"/> | 16477 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG,out_FLAG,mzid_out_FLAG"/> |
| 16824 <output name="ctd_out" ftype="xml"> | 16478 <output name="ctd_out" ftype="xml"> |
| 16825 <assert_contents> | 16479 <assert_contents> |
| 16826 <is_valid_xml/> | 16480 <is_valid_xml/> |
| 17080 <param name="precursor_mass_tolerance_unit" value="ppm"/> | 16734 <param name="precursor_mass_tolerance_unit" value="ppm"/> |
| 17081 <param name="precursor_mass_tolerance_avg" value="false"/> | 16735 <param name="precursor_mass_tolerance_avg" value="false"/> |
| 17082 <param name="fragment_mass_tolerance" value="0.3"/> | 16736 <param name="fragment_mass_tolerance" value="0.3"/> |
| 17083 <param name="fragment_mass_tolerance_unit" value="Da"/> | 16737 <param name="fragment_mass_tolerance_unit" value="Da"/> |
| 17084 <param name="database" value="proteins.fasta"/> | 16738 <param name="database" value="proteins.fasta"/> |
| 17085 <param name="fixed_modifications" value=""/> | 16739 <param name="fixed_modifications" value="Carbamidomethyl (C)"/> |
| 17086 <param name="variable_modifications" value="Oxidation (M)"/> | 16740 <param name="variable_modifications" value="Oxidation (M)"/> |
| 17087 <param name="NumChargeStates" value="3"/> | 16741 <param name="NumChargeStates" value="3"/> |
| 17088 <param name="TicCutoffPercentage" value="0.98"/> | 16742 <param name="TicCutoffPercentage" value="0.98"/> |
| 17089 <param name="MaxDynamicMods" value="2"/> | 16743 <param name="MaxDynamicMods" value="2"/> |
| 17090 <param name="MaxResultRank" value="5"/> | 16744 <param name="MaxResultRank" value="5"/> |
| 17091 <param name="CleavageRules" value=""/> | |
| 17092 <param name="MinTerminiCleavages" value="2"/> | 16745 <param name="MinTerminiCleavages" value="2"/> |
| 17093 <param name="MaxMissedCleavages" value="-1"/> | 16746 <param name="MaxMissedCleavages" value="-1"/> |
| 17094 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> | 16747 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> |
| 17095 <output name="ctd_out" ftype="xml"> | 16748 <output name="ctd_out" ftype="xml"> |
| 17096 <assert_contents> | 16749 <assert_contents> |
| 17417 <param name="mass_tolerance" value="5.0"/> | 17070 <param name="mass_tolerance" value="5.0"/> |
| 17418 <param name="mass_tolerance_unit" value="ppm"/> | 17071 <param name="mass_tolerance_unit" value="ppm"/> |
| 17419 <param name="ions" value="a-B,c,w,y"/> | 17072 <param name="ions" value="a-B,c,w,y"/> |
| 17420 </section> | 17073 </section> |
| 17421 <section name="modifications"> | 17074 <section name="modifications"> |
| 17422 <param name="variable" value=""/> | |
| 17423 <param name="variable_max_per_oligo" value="2"/> | 17075 <param name="variable_max_per_oligo" value="2"/> |
| 17424 <param name="resolve_ambiguities" value="false"/> | 17076 <param name="resolve_ambiguities" value="false"/> |
| 17425 </section> | 17077 </section> |
| 17426 <section name="oligo"> | 17078 <section name="oligo"> |
| 17427 <param name="min_size" value="5"/> | 17079 <param name="min_size" value="5"/> |
| 17484 <param name="precursor_error_units" value="ppm"/> | 17136 <param name="precursor_error_units" value="ppm"/> |
| 17485 <param name="fragment_mass_tolerance" value="0.3"/> | 17137 <param name="fragment_mass_tolerance" value="0.3"/> |
| 17486 <param name="database" value="proteins.fasta"/> | 17138 <param name="database" value="proteins.fasta"/> |
| 17487 <param name="min_precursor_charge" value="1"/> | 17139 <param name="min_precursor_charge" value="1"/> |
| 17488 <param name="max_precursor_charge" value="3"/> | 17140 <param name="max_precursor_charge" value="3"/> |
| 17489 <param name="fixed_modifications" value=""/> | 17141 <param name="fixed_modifications" value="Carbamidomethyl (C)"/> |
| 17490 <param name="variable_modifications" value="Oxidation (M)"/> | 17142 <param name="variable_modifications" value="Oxidation (M)"/> |
| 17491 <param name="v" value="1"/> | 17143 <param name="v" value="1"/> |
| 17492 <param name="enzyme" value="Trypsin"/> | 17144 <param name="enzyme" value="Trypsin"/> |
| 17493 <param name="hl" value="30"/> | 17145 <param name="hl" value="30"/> |
| 17494 <param name="he" value="1.0"/> | 17146 <param name="he" value="1.0"/> |
| 17526 <param name="mass_tolerance" value="20.0"/> | 17178 <param name="mass_tolerance" value="20.0"/> |
| 17527 <param name="mass_tolerance_xlinks" value="20.0"/> | 17179 <param name="mass_tolerance_xlinks" value="20.0"/> |
| 17528 <param name="mass_tolerance_unit" value="ppm"/> | 17180 <param name="mass_tolerance_unit" value="ppm"/> |
| 17529 </section> | 17181 </section> |
| 17530 <section name="modifications"> | 17182 <section name="modifications"> |
| 17531 <param name="fixed" value=""/> | |
| 17532 <param name="variable" value=""/> | |
| 17533 <param name="variable_max_per_peptide" value="2"/> | 17183 <param name="variable_max_per_peptide" value="2"/> |
| 17534 </section> | 17184 </section> |
| 17535 <section name="peptide"> | 17185 <section name="peptide"> |
| 17536 <param name="min_size" value="5"/> | 17186 <param name="min_size" value="5"/> |
| 17537 <param name="missed_cleavages" value="2"/> | 17187 <param name="missed_cleavages" value="2"/> |
| 17601 </section> | 17251 </section> |
| 17602 <section name="cross_linker"> | 17252 <section name="cross_linker"> |
| 17603 <param name="residue1" value=""D" "E" "C-term""/> | 17253 <param name="residue1" value=""D" "E" "C-term""/> |
| 17604 <param name="residue2" value=""K" "S" "T" "Y" "N-term""/> | 17254 <param name="residue2" value=""K" "S" "T" "Y" "N-term""/> |
| 17605 <param name="mass" value="-18.010595"/> | 17255 <param name="mass" value="-18.010595"/> |
| 17606 <param name="mass_mono_link" value=""/> | 17256 <param name="mass_mono_link" value="156.07864431 155.094628715"/> |
| 17607 <param name="name" value="DMTMM"/> | 17257 <param name="name" value="DMTMM"/> |
| 17608 </section> | 17258 </section> |
| 17609 <section name="algorithm"> | 17259 <section name="algorithm"> |
| 17610 <param name="number_top_hits" value="1"/> | 17260 <param name="number_top_hits" value="1"/> |
| 17611 <param name="deisotope" value="auto"/> | 17261 <param name="deisotope" value="auto"/> |
| 17656 <param name="mass_tolerance" value="0.2"/> | 17306 <param name="mass_tolerance" value="0.2"/> |
| 17657 <param name="mass_tolerance_xlinks" value="0.3"/> | 17307 <param name="mass_tolerance_xlinks" value="0.3"/> |
| 17658 <param name="mass_tolerance_unit" value="Da"/> | 17308 <param name="mass_tolerance_unit" value="Da"/> |
| 17659 </section> | 17309 </section> |
| 17660 <section name="modifications"> | 17310 <section name="modifications"> |
| 17661 <param name="fixed" value=""/> | |
| 17662 <param name="variable" value=""/> | |
| 17663 <param name="variable_max_per_peptide" value="2"/> | 17311 <param name="variable_max_per_peptide" value="2"/> |
| 17664 </section> | 17312 </section> |
| 17665 <section name="peptide"> | 17313 <section name="peptide"> |
| 17666 <param name="min_size" value="5"/> | 17314 <param name="min_size" value="5"/> |
| 17667 <param name="missed_cleavages" value="2"/> | 17315 <param name="missed_cleavages" value="2"/> |
| 19777 <param name="force" value="false"/> | 19425 <param name="force" value="false"/> |
| 19778 <param name="test" value="false"/> | 19426 <param name="test" value="false"/> |
| 19779 </conditional> | 19427 </conditional> |
| 19780 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 19428 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
| 19781 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 19429 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 19782 <param name="tr_type" value=""/> | |
| 19783 <output name="out_features" file="OpenSwathWorkflow_1_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 19430 <output name="out_features" file="OpenSwathWorkflow_1_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 19784 <output name="out_chrom" file="OpenSwathWorkflow_1_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 19431 <output name="out_chrom" file="OpenSwathWorkflow_1_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 19785 <output name="out_qc" file="OpenSwathWorkflow_1_output.json" compare="sim_size" delta="5700" ftype="json"/> | 19432 <output name="out_qc" file="OpenSwathWorkflow_1_output.json" compare="sim_size" delta="5700" ftype="json"/> |
| 19786 <param name="sonar" value="false"/> | 19433 <param name="sonar" value="false"/> |
| 19787 <param name="rt_extraction_window" value="600.0"/> | 19434 <param name="rt_extraction_window" value="600.0"/> |
| 19935 <param name="force" value="false"/> | 19582 <param name="force" value="false"/> |
| 19936 <param name="test" value="false"/> | 19583 <param name="test" value="false"/> |
| 19937 </conditional> | 19584 </conditional> |
| 19938 <param name="in" value="OpenSwathWorkflow_2_input.mzXML"/> | 19585 <param name="in" value="OpenSwathWorkflow_2_input.mzXML"/> |
| 19939 <param name="tr" value="OpenSwathWorkflow_2_input.TraML"/> | 19586 <param name="tr" value="OpenSwathWorkflow_2_input.TraML"/> |
| 19940 <param name="tr_type" value=""/> | |
| 19941 <output name="out_features" file="OpenSwathWorkflow_2_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 19587 <output name="out_features" file="OpenSwathWorkflow_2_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 19942 <output name="out_chrom" file="OpenSwathWorkflow_2_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 19588 <output name="out_chrom" file="OpenSwathWorkflow_2_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 19943 <param name="sonar" value="false"/> | 19589 <param name="sonar" value="false"/> |
| 19944 <param name="rt_extraction_window" value="600.0"/> | 19590 <param name="rt_extraction_window" value="600.0"/> |
| 19945 <param name="ion_mobility_window" value="-1.0"/> | 19591 <param name="ion_mobility_window" value="-1.0"/> |
| 20092 <param name="force" value="false"/> | 19738 <param name="force" value="false"/> |
| 20093 <param name="test" value="false"/> | 19739 <param name="test" value="false"/> |
| 20094 </conditional> | 19740 </conditional> |
| 20095 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 19741 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
| 20096 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 19742 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 20097 <param name="tr_type" value=""/> | |
| 20098 <output name="out_features" file="OpenSwathWorkflow_3_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 19743 <output name="out_features" file="OpenSwathWorkflow_3_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 20099 <output name="out_chrom" file="OpenSwathWorkflow_3_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 19744 <output name="out_chrom" file="OpenSwathWorkflow_3_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 20100 <param name="sonar" value="false"/> | 19745 <param name="sonar" value="false"/> |
| 20101 <param name="rt_extraction_window" value="600.0"/> | 19746 <param name="rt_extraction_window" value="600.0"/> |
| 20102 <param name="ion_mobility_window" value="-1.0"/> | 19747 <param name="ion_mobility_window" value="-1.0"/> |
| 20249 <param name="force" value="false"/> | 19894 <param name="force" value="false"/> |
| 20250 <param name="test" value="false"/> | 19895 <param name="test" value="false"/> |
| 20251 </conditional> | 19896 </conditional> |
| 20252 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 19897 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
| 20253 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 19898 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 20254 <param name="tr_type" value=""/> | |
| 20255 <output name="out_tsv" file="OpenSwathWorkflow_4.tsv.tmp" compare="sim_size" delta="5700" ftype="tabular"/> | 19899 <output name="out_tsv" file="OpenSwathWorkflow_4.tsv.tmp" compare="sim_size" delta="5700" ftype="tabular"/> |
| 20256 <output name="out_chrom" file="OpenSwathWorkflow_4.chrom.mzML.tmp" compare="sim_size" delta="5700" ftype="mzml"/> | 19900 <output name="out_chrom" file="OpenSwathWorkflow_4.chrom.mzML.tmp" compare="sim_size" delta="5700" ftype="mzml"/> |
| 20257 <param name="sonar" value="false"/> | 19901 <param name="sonar" value="false"/> |
| 20258 <param name="rt_extraction_window" value="600.0"/> | 19902 <param name="rt_extraction_window" value="600.0"/> |
| 20259 <param name="ion_mobility_window" value="-1.0"/> | 19903 <param name="ion_mobility_window" value="-1.0"/> |
| 20406 <param name="force" value="false"/> | 20050 <param name="force" value="false"/> |
| 20407 <param name="test" value="false"/> | 20051 <param name="test" value="false"/> |
| 20408 </conditional> | 20052 </conditional> |
| 20409 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 20053 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
| 20410 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 20054 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 20411 <param name="tr_type" value=""/> | |
| 20412 <output name="out_features" file="OpenSwathWorkflow_3_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 20055 <output name="out_features" file="OpenSwathWorkflow_3_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 20413 <output name="out_chrom" file="OpenSwathWorkflow_3_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 20056 <output name="out_chrom" file="OpenSwathWorkflow_3_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 20414 <param name="sonar" value="false"/> | 20057 <param name="sonar" value="false"/> |
| 20415 <param name="rt_extraction_window" value="600.0"/> | 20058 <param name="rt_extraction_window" value="600.0"/> |
| 20416 <param name="ion_mobility_window" value="-1.0"/> | 20059 <param name="ion_mobility_window" value="-1.0"/> |
| 20563 <param name="force" value="false"/> | 20206 <param name="force" value="false"/> |
| 20564 <param name="test" value="false"/> | 20207 <param name="test" value="false"/> |
| 20565 </conditional> | 20208 </conditional> |
| 20566 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 20209 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
| 20567 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 20210 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 20568 <param name="tr_type" value=""/> | |
| 20569 <output name="out_features" file="OpenSwathWorkflow_3_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 20211 <output name="out_features" file="OpenSwathWorkflow_3_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 20570 <output name="out_chrom" file="OpenSwathWorkflow_3_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 20212 <output name="out_chrom" file="OpenSwathWorkflow_3_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 20571 <param name="sonar" value="false"/> | 20213 <param name="sonar" value="false"/> |
| 20572 <param name="rt_extraction_window" value="600.0"/> | 20214 <param name="rt_extraction_window" value="600.0"/> |
| 20573 <param name="ion_mobility_window" value="-1.0"/> | 20215 <param name="ion_mobility_window" value="-1.0"/> |
| 20720 <param name="force" value="false"/> | 20362 <param name="force" value="false"/> |
| 20721 <param name="test" value="false"/> | 20363 <param name="test" value="false"/> |
| 20722 </conditional> | 20364 </conditional> |
| 20723 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 20365 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
| 20724 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 20366 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 20725 <param name="tr_type" value=""/> | |
| 20726 <param name="swath_windows_file" value="swath_windows.txt" ftype="txt"/> | 20367 <param name="swath_windows_file" value="swath_windows.txt" ftype="txt"/> |
| 20727 <output name="out_features" file="OpenSwathWorkflow_3_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 20368 <output name="out_features" file="OpenSwathWorkflow_3_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 20728 <output name="out_chrom" file="OpenSwathWorkflow_3_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 20369 <output name="out_chrom" file="OpenSwathWorkflow_3_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 20729 <param name="sonar" value="false"/> | 20370 <param name="sonar" value="false"/> |
| 20730 <param name="rt_extraction_window" value="600.0"/> | 20371 <param name="rt_extraction_window" value="600.0"/> |
| 20878 <param name="force" value="true"/> | 20519 <param name="force" value="true"/> |
| 20879 <param name="test" value="false"/> | 20520 <param name="test" value="false"/> |
| 20880 </conditional> | 20521 </conditional> |
| 20881 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 20522 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
| 20882 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 20523 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 20883 <param name="tr_type" value=""/> | |
| 20884 <param name="swath_windows_file" value="swath_windows_overlap.txt" ftype="txt"/> | 20524 <param name="swath_windows_file" value="swath_windows_overlap.txt" ftype="txt"/> |
| 20885 <output name="out_features" file="OpenSwathWorkflow_10.featureXML.tmp" compare="sim_size" delta="5700" ftype="featurexml"/> | 20525 <output name="out_features" file="OpenSwathWorkflow_10.featureXML.tmp" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 20886 <output name="out_chrom" file="OpenSwathWorkflow_10.chrom.mzML.tmp" compare="sim_size" delta="5700" ftype="mzml"/> | 20526 <output name="out_chrom" file="OpenSwathWorkflow_10.chrom.mzML.tmp" compare="sim_size" delta="5700" ftype="mzml"/> |
| 20887 <param name="sonar" value="false"/> | 20527 <param name="sonar" value="false"/> |
| 20888 <param name="rt_extraction_window" value="600.0"/> | 20528 <param name="rt_extraction_window" value="600.0"/> |
| 21035 <param name="force" value="false"/> | 20675 <param name="force" value="false"/> |
| 21036 <param name="test" value="false"/> | 20676 <param name="test" value="false"/> |
| 21037 </conditional> | 20677 </conditional> |
| 21038 <param name="in" value="OpenSwathWorkflow_11_input.mzML"/> | 20678 <param name="in" value="OpenSwathWorkflow_11_input.mzML"/> |
| 21039 <param name="tr" value="OpenSwathWorkflow_11_input_2.TraML"/> | 20679 <param name="tr" value="OpenSwathWorkflow_11_input_2.TraML"/> |
| 21040 <param name="tr_type" value=""/> | |
| 21041 <param name="tr_irt" value="OpenSwathWorkflow_11_input.TraML"/> | 20680 <param name="tr_irt" value="OpenSwathWorkflow_11_input.TraML"/> |
| 21042 <output name="out_features" file="OpenSwathWorkflow_11_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 20681 <output name="out_features" file="OpenSwathWorkflow_11_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 21043 <output name="out_chrom" file="OpenSwathWorkflow_11_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 20682 <output name="out_chrom" file="OpenSwathWorkflow_11_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 21044 <param name="sonar" value="true"/> | 20683 <param name="sonar" value="true"/> |
| 21045 <param name="rt_extraction_window" value="-1.0"/> | 20684 <param name="rt_extraction_window" value="-1.0"/> |
| 21507 <param name="force" value="false"/> | 21146 <param name="force" value="false"/> |
| 21508 <param name="test" value="true"/> | 21147 <param name="test" value="true"/> |
| 21509 </conditional> | 21148 </conditional> |
| 21510 <param name="in" value="OpenSwathWorkflow_15_input.mzML"/> | 21149 <param name="in" value="OpenSwathWorkflow_15_input.mzML"/> |
| 21511 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 21150 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 21512 <param name="tr_type" value=""/> | |
| 21513 <output name="out_features" file="OpenSwathWorkflow_15_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 21151 <output name="out_features" file="OpenSwathWorkflow_15_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 21514 <output name="out_chrom" file="OpenSwathWorkflow_15_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 21152 <output name="out_chrom" file="OpenSwathWorkflow_15_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 21515 <param name="sonar" value="false"/> | 21153 <param name="sonar" value="false"/> |
| 21516 <param name="rt_extraction_window" value="600.0"/> | 21154 <param name="rt_extraction_window" value="600.0"/> |
| 21517 <param name="ion_mobility_window" value="-1.0"/> | 21155 <param name="ion_mobility_window" value="-1.0"/> |
| 21664 <param name="force" value="false"/> | 21302 <param name="force" value="false"/> |
| 21665 <param name="test" value="false"/> | 21303 <param name="test" value="false"/> |
| 21666 </conditional> | 21304 </conditional> |
| 21667 <param name="in" value="OpenSwathWorkflow_16_input.sqMass"/> | 21305 <param name="in" value="OpenSwathWorkflow_16_input.sqMass"/> |
| 21668 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 21306 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 21669 <param name="tr_type" value=""/> | |
| 21670 <output name="out_features" file="OpenSwathWorkflow_16_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 21307 <output name="out_features" file="OpenSwathWorkflow_16_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 21671 <output name="out_chrom" file="OpenSwathWorkflow_16_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 21308 <output name="out_chrom" file="OpenSwathWorkflow_16_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 21672 <param name="sonar" value="false"/> | 21309 <param name="sonar" value="false"/> |
| 21673 <param name="rt_extraction_window" value="600.0"/> | 21310 <param name="rt_extraction_window" value="600.0"/> |
| 21674 <param name="ion_mobility_window" value="-1.0"/> | 21311 <param name="ion_mobility_window" value="-1.0"/> |
| 21820 <param name="force" value="false"/> | 21457 <param name="force" value="false"/> |
| 21821 <param name="test" value="false"/> | 21458 <param name="test" value="false"/> |
| 21822 </conditional> | 21459 </conditional> |
| 21823 <param name="in" value="OpenSwathWorkflow_17_input.mzML"/> | 21460 <param name="in" value="OpenSwathWorkflow_17_input.mzML"/> |
| 21824 <param name="tr" value="OpenSwathWorkflow_17_input.tsv" ftype="tabular"/> | 21461 <param name="tr" value="OpenSwathWorkflow_17_input.tsv" ftype="tabular"/> |
| 21825 <param name="tr_type" value=""/> | |
| 21826 <output name="out_features" file="OpenSwathWorkflow_17.featureXML.tmp" compare="sim_size" delta="5700" ftype="featurexml"/> | 21462 <output name="out_features" file="OpenSwathWorkflow_17.featureXML.tmp" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 21827 <output name="out_chrom" file="OpenSwathWorkflow_17.chrom.mzML.tmp" compare="sim_size" delta="5700" ftype="mzml"/> | 21463 <output name="out_chrom" file="OpenSwathWorkflow_17.chrom.mzML.tmp" compare="sim_size" delta="5700" ftype="mzml"/> |
| 21828 <param name="sonar" value="false"/> | 21464 <param name="sonar" value="false"/> |
| 21829 <param name="rt_extraction_window" value="600.0"/> | 21465 <param name="rt_extraction_window" value="600.0"/> |
| 21830 <param name="ion_mobility_window" value="0.05"/> | 21466 <param name="ion_mobility_window" value="0.05"/> |
| 21976 <param name="force" value="false"/> | 21612 <param name="force" value="false"/> |
| 21977 <param name="test" value="false"/> | 21613 <param name="test" value="false"/> |
| 21978 </conditional> | 21614 </conditional> |
| 21979 <param name="in" value="OpenSwathWorkflow_17_input.mzML"/> | 21615 <param name="in" value="OpenSwathWorkflow_17_input.mzML"/> |
| 21980 <param name="tr" value="OpenSwathWorkflow_17_input.tsv" ftype="tabular"/> | 21616 <param name="tr" value="OpenSwathWorkflow_17_input.tsv" ftype="tabular"/> |
| 21981 <param name="tr_type" value=""/> | |
| 21982 <output name="out_features" file="OpenSwathWorkflow_17.featureXML.tmp" compare="sim_size" delta="5700" ftype="featurexml"/> | 21617 <output name="out_features" file="OpenSwathWorkflow_17.featureXML.tmp" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 21983 <output name="out_chrom" file="OpenSwathWorkflow_17.chrom.mzML.tmp" compare="sim_size" delta="5700" ftype="mzml"/> | 21618 <output name="out_chrom" file="OpenSwathWorkflow_17.chrom.mzML.tmp" compare="sim_size" delta="5700" ftype="mzml"/> |
| 21984 <param name="sonar" value="false"/> | 21619 <param name="sonar" value="false"/> |
| 21985 <param name="rt_extraction_window" value="600.0"/> | 21620 <param name="rt_extraction_window" value="600.0"/> |
| 21986 <param name="ion_mobility_window" value="0.05"/> | 21621 <param name="ion_mobility_window" value="0.05"/> |
| 22288 <param name="force" value="false"/> | 21923 <param name="force" value="false"/> |
| 22289 <param name="test" value="true"/> | 21924 <param name="test" value="true"/> |
| 22290 </conditional> | 21925 </conditional> |
| 22291 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 21926 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
| 22292 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 21927 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 22293 <param name="tr_type" value=""/> | |
| 22294 <output name="out_features" file="OpenSwathWorkflow_18_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 21928 <output name="out_features" file="OpenSwathWorkflow_18_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 22295 <param name="sonar" value="false"/> | 21929 <param name="sonar" value="false"/> |
| 22296 <param name="rt_extraction_window" value="600.0"/> | 21930 <param name="rt_extraction_window" value="600.0"/> |
| 22297 <param name="ion_mobility_window" value="-1.0"/> | 21931 <param name="ion_mobility_window" value="-1.0"/> |
| 22298 <param name="mz_extraction_window" value="0.05"/> | 21932 <param name="mz_extraction_window" value="0.05"/> |
| 22443 <param name="force" value="false"/> | 22077 <param name="force" value="false"/> |
| 22444 <param name="test" value="true"/> | 22078 <param name="test" value="true"/> |
| 22445 </conditional> | 22079 </conditional> |
| 22446 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 22080 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
| 22447 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 22081 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 22448 <param name="tr_type" value=""/> | |
| 22449 <output name="out_features" file="OpenSwathWorkflow_19_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 22082 <output name="out_features" file="OpenSwathWorkflow_19_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 22450 <param name="sonar" value="false"/> | 22083 <param name="sonar" value="false"/> |
| 22451 <param name="rt_extraction_window" value="600.0"/> | 22084 <param name="rt_extraction_window" value="600.0"/> |
| 22452 <param name="ion_mobility_window" value="-1.0"/> | 22085 <param name="ion_mobility_window" value="-1.0"/> |
| 22453 <param name="mz_extraction_window" value="0.05"/> | 22086 <param name="mz_extraction_window" value="0.05"/> |
| 22598 <param name="force" value="false"/> | 22231 <param name="force" value="false"/> |
| 22599 <param name="test" value="true"/> | 22232 <param name="test" value="true"/> |
| 22600 </conditional> | 22233 </conditional> |
| 22601 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 22234 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
| 22602 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | 22235 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
| 22603 <param name="tr_type" value=""/> | |
| 22604 <output name="out_features" file="OpenSwathWorkflow_20_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 22236 <output name="out_features" file="OpenSwathWorkflow_20_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 22605 <param name="sonar" value="false"/> | 22237 <param name="sonar" value="false"/> |
| 22606 <param name="rt_extraction_window" value="600.0"/> | 22238 <param name="rt_extraction_window" value="600.0"/> |
| 22607 <param name="ion_mobility_window" value="-1.0"/> | 22239 <param name="ion_mobility_window" value="-1.0"/> |
| 22608 <param name="mz_extraction_window" value="0.05"/> | 22240 <param name="mz_extraction_window" value="0.05"/> |
| 22753 <param name="force" value="false"/> | 22385 <param name="force" value="false"/> |
| 22754 <param name="test" value="true"/> | 22386 <param name="test" value="true"/> |
| 22755 </conditional> | 22387 </conditional> |
| 22756 <param name="in" value="OpenSwathWorkflow_21_input.mzML"/> | 22388 <param name="in" value="OpenSwathWorkflow_21_input.mzML"/> |
| 22757 <param name="tr" value="OpenSwathWorkflow_21_input.tsv" ftype="tabular"/> | 22389 <param name="tr" value="OpenSwathWorkflow_21_input.tsv" ftype="tabular"/> |
| 22758 <param name="tr_type" value=""/> | |
| 22759 <param name="tr_irt" value="OpenSwathWorkflow_21_input.irt.TraML"/> | 22390 <param name="tr_irt" value="OpenSwathWorkflow_21_input.irt.TraML"/> |
| 22760 <output name="out_features" file="OpenSwathWorkflow_21_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 22391 <output name="out_features" file="OpenSwathWorkflow_21_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 22761 <output name="out_chrom" file="OpenSwathWorkflow_21_output.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 22392 <output name="out_chrom" file="OpenSwathWorkflow_21_output.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 22762 <param name="sonar" value="false"/> | 22393 <param name="sonar" value="false"/> |
| 22763 <param name="rt_extraction_window" value="600.0"/> | 22394 <param name="rt_extraction_window" value="600.0"/> |
| 22911 <param name="force" value="false"/> | 22542 <param name="force" value="false"/> |
| 22912 <param name="test" value="false"/> | 22543 <param name="test" value="false"/> |
| 22913 </conditional> | 22544 </conditional> |
| 22914 <param name="in" value="OpenSwathWorkflow_22_input.mzML"/> | 22545 <param name="in" value="OpenSwathWorkflow_22_input.mzML"/> |
| 22915 <param name="tr" value="OpenSwathWorkflow_22_input.tsv" ftype="tabular"/> | 22546 <param name="tr" value="OpenSwathWorkflow_22_input.tsv" ftype="tabular"/> |
| 22916 <param name="tr_type" value=""/> | |
| 22917 <output name="out_features" file="OpenSwathWorkflow_22_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> | 22547 <output name="out_features" file="OpenSwathWorkflow_22_output.featureXML" compare="sim_size" delta="5700" ftype="featurexml"/> |
| 22918 <output name="out_chrom" file="OpenSwathWorkflow_22_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> | 22548 <output name="out_chrom" file="OpenSwathWorkflow_22_output.chrom.mzML" compare="sim_size" delta="5700" ftype="mzml"/> |
| 22919 <param name="sonar" value="false"/> | 22549 <param name="sonar" value="false"/> |
| 22920 <param name="rt_extraction_window" value="600.0"/> | 22550 <param name="rt_extraction_window" value="600.0"/> |
| 22921 <param name="ion_mobility_window" value="-1.0"/> | 22551 <param name="ion_mobility_window" value="-1.0"/> |
| 24955 <section name="fragment"> | 24585 <section name="fragment"> |
| 24956 <param name="mass_tolerance" value="20.0"/> | 24586 <param name="mass_tolerance" value="20.0"/> |
| 24957 <param name="mass_tolerance_unit" value="ppm"/> | 24587 <param name="mass_tolerance_unit" value="ppm"/> |
| 24958 </section> | 24588 </section> |
| 24959 <section name="modifications"> | 24589 <section name="modifications"> |
| 24960 <param name="fixed" value=""/> | |
| 24961 <param name="variable" value="Oxidation (M)"/> | 24590 <param name="variable" value="Oxidation (M)"/> |
| 24962 <param name="variable_max_per_peptide" value="2"/> | 24591 <param name="variable_max_per_peptide" value="2"/> |
| 24963 </section> | 24592 </section> |
| 24964 <section name="peptide"> | 24593 <section name="peptide"> |
| 24965 <param name="min_size" value="6"/> | 24594 <param name="min_size" value="6"/> |
| 25014 <section name="fragment"> | 24643 <section name="fragment"> |
| 25015 <param name="mass_tolerance" value="20.0"/> | 24644 <param name="mass_tolerance" value="20.0"/> |
| 25016 <param name="mass_tolerance_unit" value="ppm"/> | 24645 <param name="mass_tolerance_unit" value="ppm"/> |
| 25017 </section> | 24646 </section> |
| 25018 <section name="modifications"> | 24647 <section name="modifications"> |
| 25019 <param name="fixed" value=""/> | |
| 25020 <param name="variable" value="Oxidation (M)"/> | 24648 <param name="variable" value="Oxidation (M)"/> |
| 25021 <param name="variable_max_per_peptide" value="2"/> | 24649 <param name="variable_max_per_peptide" value="2"/> |
| 25022 </section> | 24650 </section> |
| 25023 <section name="peptide"> | 24651 <section name="peptide"> |
| 25024 <param name="min_size" value="6"/> | 24652 <param name="min_size" value="6"/> |
| 25074 <section name="fragment"> | 24702 <section name="fragment"> |
| 25075 <param name="mass_tolerance" value="10.0"/> | 24703 <param name="mass_tolerance" value="10.0"/> |
| 25076 <param name="mass_tolerance_unit" value="ppm"/> | 24704 <param name="mass_tolerance_unit" value="ppm"/> |
| 25077 </section> | 24705 </section> |
| 25078 <section name="modifications"> | 24706 <section name="modifications"> |
| 25079 <param name="fixed" value=""/> | |
| 25080 <param name="variable" value=""/> | |
| 25081 <param name="variable_max_per_peptide" value="2"/> | 24707 <param name="variable_max_per_peptide" value="2"/> |
| 25082 </section> | 24708 </section> |
| 25083 <section name="peptide"> | 24709 <section name="peptide"> |
| 25084 <param name="min_size" value="6"/> | 24710 <param name="min_size" value="6"/> |
| 25085 <param name="max_size" value="1000000"/> | 24711 <param name="max_size" value="1000000"/> |
| 25134 <section name="fragment"> | 24760 <section name="fragment"> |
| 25135 <param name="mass_tolerance" value="10.0"/> | 24761 <param name="mass_tolerance" value="10.0"/> |
| 25136 <param name="mass_tolerance_unit" value="ppm"/> | 24762 <param name="mass_tolerance_unit" value="ppm"/> |
| 25137 </section> | 24763 </section> |
| 25138 <section name="modifications"> | 24764 <section name="modifications"> |
| 25139 <param name="fixed" value=""/> | |
| 25140 <param name="variable" value=""/> | |
| 25141 <param name="variable_max_per_peptide" value="2"/> | 24765 <param name="variable_max_per_peptide" value="2"/> |
| 25142 </section> | 24766 </section> |
| 25143 <section name="peptide"> | 24767 <section name="peptide"> |
| 25144 <param name="min_size" value="6"/> | 24768 <param name="min_size" value="6"/> |
| 25145 <param name="max_size" value="1000000"/> | 24769 <param name="max_size" value="1000000"/> |
| 25435 <section name="fragment"> | 25059 <section name="fragment"> |
| 25436 <param name="mass_tolerance" value="0.3"/> | 25060 <param name="mass_tolerance" value="0.3"/> |
| 25437 <param name="mass_tolerance_unit" value="Da"/> | 25061 <param name="mass_tolerance_unit" value="Da"/> |
| 25438 </section> | 25062 </section> |
| 25439 <section name="modifications"> | 25063 <section name="modifications"> |
| 25440 <param name="fixed" value=""/> | 25064 <param name="fixed" value="Carbamidomethyl (C)"/> |
| 25441 <param name="variable" value="Oxidation (M)"/> | 25065 <param name="variable" value="Oxidation (M)"/> |
| 25442 <param name="variable_max_per_peptide" value="2"/> | 25066 <param name="variable_max_per_peptide" value="2"/> |
| 25443 </section> | 25067 </section> |
| 25444 <section name="annotate"> | 25068 <section name="annotate"/> |
| 25445 <param name="PSM" value=""/> | |
| 25446 </section> | |
| 25447 <section name="peptide"> | 25069 <section name="peptide"> |
| 25448 <param name="min_size" value="7"/> | 25070 <param name="min_size" value="7"/> |
| 25449 <param name="max_size" value="40"/> | 25071 <param name="max_size" value="40"/> |
| 25450 <param name="missed_cleavages" value="1"/> | 25072 <param name="missed_cleavages" value="1"/> |
| 25451 <param name="motif" value=""/> | 25073 <param name="motif" value=""/> |
| 25470 <param name="force" value="false"/> | 25092 <param name="force" value="false"/> |
| 25471 <param name="test" value="true"/> | 25093 <param name="test" value="true"/> |
| 25472 </conditional> | 25094 </conditional> |
| 25473 <param name="in" value="SiriusAdapter_1_input.mzML"/> | 25095 <param name="in" value="SiriusAdapter_1_input.mzML"/> |
| 25474 <output name="out_sirius" file="SiriusAdapter_1_output.mzTab" compare="sim_size" delta="5700" ftype="mztab"/> | 25096 <output name="out_sirius" file="SiriusAdapter_1_output.mzTab" compare="sim_size" delta="5700" ftype="mztab"/> |
| 25475 <param name="out_workspace_directory" value=""/> | |
| 25476 <section name="preprocessing"> | 25097 <section name="preprocessing"> |
| 25477 <param name="filter_by_num_masstraces" value="1"/> | 25098 <param name="filter_by_num_masstraces" value="1"/> |
| 25478 <param name="precursor_mz_tolerance" value="0.005"/> | 25099 <param name="precursor_mz_tolerance" value="0.005"/> |
| 25479 <param name="precursor_mz_tolerance_unit" value="Da"/> | 25100 <param name="precursor_mz_tolerance_unit" value="Da"/> |
| 25480 <param name="precursor_rt_tolerance" value="5"/> | 25101 <param name="precursor_rt_tolerance" value="5"/> |
| 25513 <param name="test" value="true"/> | 25134 <param name="test" value="true"/> |
| 25514 </conditional> | 25135 </conditional> |
| 25515 <param name="in" value="SiriusAdapter_2_input.mzML"/> | 25136 <param name="in" value="SiriusAdapter_2_input.mzML"/> |
| 25516 <param name="in_featureinfo" value="SiriusAdapter_2_input.featureXML"/> | 25137 <param name="in_featureinfo" value="SiriusAdapter_2_input.featureXML"/> |
| 25517 <output name="out_sirius" file="SiriusAdapter_2_output.mzTab" compare="sim_size" delta="5700" ftype="mztab"/> | 25138 <output name="out_sirius" file="SiriusAdapter_2_output.mzTab" compare="sim_size" delta="5700" ftype="mztab"/> |
| 25518 <param name="out_workspace_directory" value=""/> | |
| 25519 <section name="preprocessing"> | 25139 <section name="preprocessing"> |
| 25520 <param name="filter_by_num_masstraces" value="3"/> | 25140 <param name="filter_by_num_masstraces" value="3"/> |
| 25521 <param name="precursor_mz_tolerance" value="0.005"/> | 25141 <param name="precursor_mz_tolerance" value="0.005"/> |
| 25522 <param name="precursor_mz_tolerance_unit" value="Da"/> | 25142 <param name="precursor_mz_tolerance_unit" value="Da"/> |
| 25523 <param name="precursor_rt_tolerance" value="5"/> | 25143 <param name="precursor_rt_tolerance" value="5"/> |
| 25556 <param name="test" value="true"/> | 25176 <param name="test" value="true"/> |
| 25557 </conditional> | 25177 </conditional> |
| 25558 <param name="in" value="SiriusAdapter_3_input.mzML"/> | 25178 <param name="in" value="SiriusAdapter_3_input.mzML"/> |
| 25559 <param name="in_featureinfo" value="SiriusAdapter_3_input.featureXML"/> | 25179 <param name="in_featureinfo" value="SiriusAdapter_3_input.featureXML"/> |
| 25560 <output name="out_sirius" file="SiriusAdapter_3_output.mzTab" compare="sim_size" delta="5700" ftype="mztab"/> | 25180 <output name="out_sirius" file="SiriusAdapter_3_output.mzTab" compare="sim_size" delta="5700" ftype="mztab"/> |
| 25561 <param name="out_workspace_directory" value=""/> | |
| 25562 <section name="preprocessing"> | 25181 <section name="preprocessing"> |
| 25563 <param name="filter_by_num_masstraces" value="3"/> | 25182 <param name="filter_by_num_masstraces" value="3"/> |
| 25564 <param name="precursor_mz_tolerance" value="0.005"/> | 25183 <param name="precursor_mz_tolerance" value="0.005"/> |
| 25565 <param name="precursor_mz_tolerance_unit" value="Da"/> | 25184 <param name="precursor_mz_tolerance_unit" value="Da"/> |
| 25566 <param name="precursor_rt_tolerance" value="5"/> | 25185 <param name="precursor_rt_tolerance" value="5"/> |
| 25599 <param name="test" value="true"/> | 25218 <param name="test" value="true"/> |
| 25600 </conditional> | 25219 </conditional> |
| 25601 <param name="in" value="SiriusAdapter_3_input.mzML"/> | 25220 <param name="in" value="SiriusAdapter_3_input.mzML"/> |
| 25602 <param name="in_featureinfo" value="SiriusAdapter_3_input.featureXML"/> | 25221 <param name="in_featureinfo" value="SiriusAdapter_3_input.featureXML"/> |
| 25603 <output name="out_ms" file="SiriusAdapter_5_output.ms" compare="sim_size" delta="5700" ftype="sirius.ms"/> | 25222 <output name="out_ms" file="SiriusAdapter_5_output.ms" compare="sim_size" delta="5700" ftype="sirius.ms"/> |
| 25604 <param name="out_workspace_directory" value=""/> | |
| 25605 <section name="preprocessing"> | 25223 <section name="preprocessing"> |
| 25606 <param name="filter_by_num_masstraces" value="1"/> | 25224 <param name="filter_by_num_masstraces" value="1"/> |
| 25607 <param name="precursor_mz_tolerance" value="0.005"/> | 25225 <param name="precursor_mz_tolerance" value="0.005"/> |
| 25608 <param name="precursor_mz_tolerance_unit" value="Da"/> | 25226 <param name="precursor_mz_tolerance_unit" value="Da"/> |
| 25609 <param name="precursor_rt_tolerance" value="5"/> | 25227 <param name="precursor_rt_tolerance" value="5"/> |
| 25642 <param name="test" value="true"/> | 25260 <param name="test" value="true"/> |
| 25643 </conditional> | 25261 </conditional> |
| 25644 <param name="in" value="SiriusAdapter_4_input.mzML"/> | 25262 <param name="in" value="SiriusAdapter_4_input.mzML"/> |
| 25645 <param name="in_featureinfo" value="SiriusAdapter_4_input.featureXML"/> | 25263 <param name="in_featureinfo" value="SiriusAdapter_4_input.featureXML"/> |
| 25646 <output name="out_ms" file="SiriusAdapter_6_output.ms" compare="sim_size" delta="5700" ftype="sirius.ms"/> | 25264 <output name="out_ms" file="SiriusAdapter_6_output.ms" compare="sim_size" delta="5700" ftype="sirius.ms"/> |
| 25647 <param name="out_workspace_directory" value=""/> | |
| 25648 <section name="preprocessing"> | 25265 <section name="preprocessing"> |
| 25649 <param name="filter_by_num_masstraces" value="1"/> | 25266 <param name="filter_by_num_masstraces" value="1"/> |
| 25650 <param name="precursor_mz_tolerance" value="0.005"/> | 25267 <param name="precursor_mz_tolerance" value="0.005"/> |
| 25651 <param name="precursor_mz_tolerance_unit" value="Da"/> | 25268 <param name="precursor_mz_tolerance_unit" value="Da"/> |
| 25652 <param name="precursor_rt_tolerance" value="5"/> | 25269 <param name="precursor_rt_tolerance" value="5"/> |
| 25685 <param name="test" value="true"/> | 25302 <param name="test" value="true"/> |
| 25686 </conditional> | 25303 </conditional> |
| 25687 <param name="in" value="SiriusAdapter_4_input.mzML"/> | 25304 <param name="in" value="SiriusAdapter_4_input.mzML"/> |
| 25688 <param name="in_featureinfo" value="SiriusAdapter_4_input.featureXML"/> | 25305 <param name="in_featureinfo" value="SiriusAdapter_4_input.featureXML"/> |
| 25689 <output name="out_sirius" file="SiriusAdapter_7_output.mzTab" compare="sim_size" delta="5700" ftype="mztab"/> | 25306 <output name="out_sirius" file="SiriusAdapter_7_output.mzTab" compare="sim_size" delta="5700" ftype="mztab"/> |
| 25690 <param name="out_workspace_directory" value=""/> | |
| 25691 <section name="preprocessing"> | 25307 <section name="preprocessing"> |
| 25692 <param name="filter_by_num_masstraces" value="1"/> | 25308 <param name="filter_by_num_masstraces" value="1"/> |
| 25693 <param name="precursor_mz_tolerance" value="0.005"/> | 25309 <param name="precursor_mz_tolerance" value="0.005"/> |
| 25694 <param name="precursor_mz_tolerance_unit" value="Da"/> | 25310 <param name="precursor_mz_tolerance_unit" value="Da"/> |
| 25695 <param name="precursor_rt_tolerance" value="5"/> | 25311 <param name="precursor_rt_tolerance" value="5"/> |
| 25729 </conditional> | 25345 </conditional> |
| 25730 <param name="in" value="SiriusAdapter_2_input.mzML"/> | 25346 <param name="in" value="SiriusAdapter_2_input.mzML"/> |
| 25731 <param name="in_featureinfo" value="SiriusAdapter_2_input.featureXML"/> | 25347 <param name="in_featureinfo" value="SiriusAdapter_2_input.featureXML"/> |
| 25732 <output name="out_sirius" file="SiriusAdapter_4_output.tmp" compare="sim_size" delta="5700" ftype="mztab"/> | 25348 <output name="out_sirius" file="SiriusAdapter_4_output.tmp" compare="sim_size" delta="5700" ftype="mztab"/> |
| 25733 <output name="out_fingerid" file="SiriusAdapter_4_foutput.mzTab" compare="sim_size" delta="5700" ftype="mztab"/> | 25349 <output name="out_fingerid" file="SiriusAdapter_4_foutput.mzTab" compare="sim_size" delta="5700" ftype="mztab"/> |
| 25734 <param name="out_workspace_directory" value=""/> | |
| 25735 <section name="preprocessing"> | 25350 <section name="preprocessing"> |
| 25736 <param name="filter_by_num_masstraces" value="1"/> | 25351 <param name="filter_by_num_masstraces" value="1"/> |
| 25737 <param name="precursor_mz_tolerance" value="0.005"/> | 25352 <param name="precursor_mz_tolerance" value="0.005"/> |
| 25738 <param name="precursor_mz_tolerance_unit" value="Da"/> | 25353 <param name="precursor_mz_tolerance_unit" value="Da"/> |
| 25739 <param name="precursor_rt_tolerance" value="5"/> | 25354 <param name="precursor_rt_tolerance" value="5"/> |
| 25796 <param name="min_peaks" value="5"/> | 25411 <param name="min_peaks" value="5"/> |
| 25797 <param name="max_peaks" value="150"/> | 25412 <param name="max_peaks" value="150"/> |
| 25798 <param name="cut_peaks_below" value="1000"/> | 25413 <param name="cut_peaks_below" value="1000"/> |
| 25799 </section> | 25414 </section> |
| 25800 <section name="modifications"> | 25415 <section name="modifications"> |
| 25801 <param name="fixed" value=""/> | |
| 25802 <param name="variable" value=""/> | |
| 25803 <param name="variable_max_per_peptide" value="2"/> | 25416 <param name="variable_max_per_peptide" value="2"/> |
| 25804 </section> | 25417 </section> |
| 25805 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> | 25418 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> |
| 25806 <output name="ctd_out" ftype="xml"> | 25419 <output name="ctd_out" ftype="xml"> |
| 25807 <assert_contents> | 25420 <assert_contents> |
| 27120 <param name="fragment_mass_tolerance" value="0.3"/> | 26733 <param name="fragment_mass_tolerance" value="0.3"/> |
| 27121 <param name="precursor_error_units" value="ppm"/> | 26734 <param name="precursor_error_units" value="ppm"/> |
| 27122 <param name="fragment_error_units" value="Da"/> | 26735 <param name="fragment_error_units" value="Da"/> |
| 27123 <param name="max_precursor_charge" value="0"/> | 26736 <param name="max_precursor_charge" value="0"/> |
| 27124 <param name="no_isotope_error" value="false"/> | 26737 <param name="no_isotope_error" value="false"/> |
| 27125 <param name="fixed_modifications" value=""/> | 26738 <param name="fixed_modifications" value="Carbamidomethyl (C)"/> |
| 27126 <param name="variable_modifications" value="Oxidation (M)"/> | 26739 <param name="variable_modifications" value="Oxidation (M)"/> |
| 27127 <param name="minimum_fragment_mz" value="150.0"/> | 26740 <param name="minimum_fragment_mz" value="150.0"/> |
| 27128 <param name="enzyme" value="Trypsin"/> | 26741 <param name="enzyme" value="Trypsin"/> |
| 27129 <param name="missed_cleavages" value="1"/> | 26742 <param name="missed_cleavages" value="1"/> |
| 27130 <param name="semi_cleavage" value="false"/> | 26743 <param name="semi_cleavage" value="false"/> |
| 27152 <param name="fragment_mass_tolerance" value="0.3"/> | 26765 <param name="fragment_mass_tolerance" value="0.3"/> |
| 27153 <param name="precursor_error_units" value="ppm"/> | 26766 <param name="precursor_error_units" value="ppm"/> |
| 27154 <param name="fragment_error_units" value="Da"/> | 26767 <param name="fragment_error_units" value="Da"/> |
| 27155 <param name="max_precursor_charge" value="0"/> | 26768 <param name="max_precursor_charge" value="0"/> |
| 27156 <param name="no_isotope_error" value="false"/> | 26769 <param name="no_isotope_error" value="false"/> |
| 27157 <param name="fixed_modifications" value=""/> | 26770 <param name="fixed_modifications" value="Carbamidomethyl (C)"/> |
| 27158 <param name="variable_modifications" value="Oxidation (M)"/> | 26771 <param name="variable_modifications" value="Oxidation (M)"/> |
| 27159 <param name="minimum_fragment_mz" value="150.0"/> | 26772 <param name="minimum_fragment_mz" value="150.0"/> |
| 27160 <param name="enzyme" value="Trypsin"/> | 26773 <param name="enzyme" value="Trypsin"/> |
| 27161 <param name="missed_cleavages" value="1"/> | 26774 <param name="missed_cleavages" value="1"/> |
| 27162 <param name="semi_cleavage" value="false"/> | 26775 <param name="semi_cleavage" value="false"/> |
| 27184 <param name="fragment_mass_tolerance" value="0.3"/> | 26797 <param name="fragment_mass_tolerance" value="0.3"/> |
| 27185 <param name="precursor_error_units" value="ppm"/> | 26798 <param name="precursor_error_units" value="ppm"/> |
| 27186 <param name="fragment_error_units" value="Da"/> | 26799 <param name="fragment_error_units" value="Da"/> |
| 27187 <param name="max_precursor_charge" value="0"/> | 26800 <param name="max_precursor_charge" value="0"/> |
| 27188 <param name="no_isotope_error" value="false"/> | 26801 <param name="no_isotope_error" value="false"/> |
| 27189 <param name="fixed_modifications" value=""/> | 26802 <param name="fixed_modifications" value="Carbamidomethyl (C)"/> |
| 27190 <param name="variable_modifications" value="Oxidation (M)"/> | 26803 <param name="variable_modifications" value="Oxidation (M)"/> |
| 27191 <param name="minimum_fragment_mz" value="150.0"/> | 26804 <param name="minimum_fragment_mz" value="150.0"/> |
| 27192 <param name="enzyme" value="Trypsin"/> | 26805 <param name="enzyme" value="Trypsin"/> |
| 27193 <param name="missed_cleavages" value="1"/> | 26806 <param name="missed_cleavages" value="1"/> |
| 27194 <param name="semi_cleavage" value="false"/> | 26807 <param name="semi_cleavage" value="false"/> |
| 27200 <is_valid_xml/> | 26813 <is_valid_xml/> |
| 27201 </assert_contents> | 26814 </assert_contents> |
| 27202 </output> | 26815 </output> |
| 27203 </test> | 26816 </test> |
| 27204 </xml> | 26817 </xml> |
| 27205 <xml name="autotest_PTPredict"/><xml name="autotest_InclusionExclusionListCreator"/><xml name="autotest_RTPredict"/><xml name="autotest_ProteomicsLFQ"/><xml name="autotest_IDDecoyProbability"/><xml name="autotest_InspectAdapter"/></macros> | 26818 <xml name="autotest_PTPredict"/><xml name="autotest_InclusionExclusionListCreator"/><xml name="autotest_IDDecoyProbability"/><xml name="autotest_InspectAdapter"/><xml name="autotest_RTPredict"/><xml name="autotest_ProteomicsLFQ"/></macros> |