Mercurial > repos > galaxyp > openms_consensusmapnormalizer

comparison ConsensusMapNormalizer.xml @ 15:226f58ac71c5 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:46:16 +0000
parents 9ff14d340f84
children d9802c463a2f
comparison
equal deleted inserted replaced
14:8a205687e384 15:226f58ac71c5
55 <expand macro="list_string_san"/> 55 <expand macro="list_string_san"/>
56 </param> 56 </param>
57 <param name="description_filter" argument="-description_filter" type="text" optional="true" value="" label="Use only features with description (partially) matching this regular expression for computing the normalization factors" help="Useful, e.g., if you have known house keeping proteins in your samples. When this parameter is empty or the regular expression matches the empty string, all features are used (even those without an ID). No effect if quantile normalization is used"> 57 <param name="description_filter" argument="-description_filter" type="text" optional="true" value="" label="Use only features with description (partially) matching this regular expression for computing the normalization factors" help="Useful, e.g., if you have known house keeping proteins in your samples. When this parameter is empty or the regular expression matches the empty string, all features are used (even those without an ID). No effect if quantile normalization is used">
58 <expand macro="list_string_san"/> 58 <expand macro="list_string_san"/>
59 </param> 59 </param>
60 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 60 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
61 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 61 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
62 <expand macro="list_string_san"/> 62 <expand macro="list_string_san"/>
63 </param> 63 </param>
64 </expand> 64 </expand>
65 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 65 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
66 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 66 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
67 </param> 67 </param>
68 </inputs> 68 </inputs>
69 <outputs> 69 <outputs>
70 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/> 70 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/>
77 <expand macro="manutest_ConsensusMapNormalizer"/> 77 <expand macro="manutest_ConsensusMapNormalizer"/>
78 </tests> 78 </tests>
79 <help><![CDATA[Normalizes maps of one consensusXML file 79 <help><![CDATA[Normalizes maps of one consensusXML file
80 80
81 81
82 For more information, visit http://www.openms.de/documentation/TOPP_ConsensusMapNormalizer.html]]></help> 82 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_ConsensusMapNormalizer.html]]></help>
83 <expand macro="references"/> 83 <expand macro="references"/>
84 </tool> 84 </tool>