Mercurial > repos > galaxyp > openms_cvinspector

comparison CVInspector.xml @ 15:53695d887eaa draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:56:37 +0000
parents 3b585b370ab8
children f95704542c63
comparison
equal deleted inserted replaced
14:ae70a8086504 15:53695d887eaa
67 <param name="ignore_cv" argument="-ignore_cv" type="text" optional="true" value="UO PATO BTO" label="A list of CV identifiers which should be ignored" help=" (space separated list, in order to allow for spaces in list items surround them by single quotes)"> 67 <param name="ignore_cv" argument="-ignore_cv" type="text" optional="true" value="UO PATO BTO" label="A list of CV identifiers which should be ignored" help=" (space separated list, in order to allow for spaces in list items surround them by single quotes)">
68 <expand macro="list_string_val"/> 68 <expand macro="list_string_val"/>
69 <expand macro="list_string_san"/> 69 <expand macro="list_string_san"/>
70 </param> 70 </param>
71 <expand macro="adv_opts_macro"> 71 <expand macro="adv_opts_macro">
72 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 72 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
73 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 73 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
74 <expand macro="list_string_san"/> 74 <expand macro="list_string_san"/>
75 </param> 75 </param>
76 </expand> 76 </expand>
77 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false"> 77 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
78 <option value="html_FLAG">html (Enables the test mode (needed for internal use only))</option> 78 <option value="html_FLAG">html (Writes an HTML version of the mapping file with annotated CV terms)</option>
79 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 79 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
80 </param> 80 </param>
81 </inputs> 81 </inputs>
82 <outputs> 82 <outputs>
83 <data name="html" label="${tool.name} on ${on_string}: html" format="html"> 83 <data name="html" label="${tool.name} on ${on_string}: html" format="html">
95 <expand macro="manutest_CVInspector"/> 95 <expand macro="manutest_CVInspector"/>
96 </tests> 96 </tests>
97 <help><![CDATA[A tool for visualization and validation of PSI mapping and CV files. 97 <help><![CDATA[A tool for visualization and validation of PSI mapping and CV files.
98 98
99 99
100 For more information, visit http://www.openms.de/documentation/UTILS_CVInspector.html]]></help> 100 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_CVInspector.html]]></help>
101 <expand macro="references"/> 101 <expand macro="references"/>
102 </tool> 102 </tool>