Mercurial > repos > galaxyp > openms_databasefilter
comparison DatabaseFilter.xml @ 8:27b22fc937b8 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Fri, 17 May 2019 05:02:38 -0400 |
parents | 3d430f968194 |
children | d589c931720d |
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7:b30134671ac5 | 8:27b22fc937b8 |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>DatabaseFilter | 13 <command detect_errors="aggressive"><![CDATA[DatabaseFilter |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_id: | 18 #if $param_id: |
32 #if $adv_opts.adv_opts_selector=='advanced': | 32 #if $adv_opts.adv_opts_selector=='advanced': |
33 #if $adv_opts.param_force: | 33 #if $adv_opts.param_force: |
34 -force | 34 -force |
35 #end if | 35 #end if |
36 #end if | 36 #end if |
37 </command> | 37 ]]></command> |
38 <inputs> | 38 <inputs> |
39 <param name="param_in" type="data" format="fasta" optional="False" label="Input FASTA file, containing a database" help="(-in) "/> | 39 <param name="param_in" type="data" format="fasta" optional="False" label="Input FASTA file, containing a database" help="(-in) "/> |
40 <param name="param_id" type="data" format="idxml,mzid" optional="False" label="Input file containing identified peptides and proteins" help="(-id) "/> | 40 <param name="param_id" type="data" format="idxml,mzid" optional="False" label="Input file containing identified peptides and proteins" help="(-id) "/> |
41 <param name="param_method" display="radio" type="select" optional="False" value="whitelist" label="Switch between white-/blacklisting" help="(-method) "> | 41 <param name="param_method" display="radio" type="select" optional="False" value="whitelist" label="Switch between white-/blacklisting" help="(-method) "> |
42 <option value="whitelist" selected="true">whitelist</option> | 42 <option value="whitelist" selected="true">whitelist</option> |
50 <data name="param_out" format="fasta"/> | 50 <data name="param_out" format="fasta"/> |
51 </outputs> | 51 </outputs> |
52 <help>Filters a protein database (FASTA format) based on identified proteins | 52 <help>Filters a protein database (FASTA format) based on identified proteins |
53 | 53 |
54 | 54 |
55 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DatabaseFilter.html</help> | 55 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_DatabaseFilter.html</help> |
56 </tool> | 56 </tool> |