Mercurial > repos > galaxyp > openms_decharger

comparison Decharger.xml @ 15:62cce3757d5b draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:22:09 +0000
parents 95bf997c9cf5
children 566029692c59
comparison
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14:b7f550d1fa7e 15:62cce3757d5b
95 </param> 95 </param>
96 <param name="verbose_level" argument="-algorithm:FeatureDeconvolution:verbose_level" type="integer" optional="true" min="0" max="3" value="0" label="Amount of debug information given during processing" help=""/> 96 <param name="verbose_level" argument="-algorithm:FeatureDeconvolution:verbose_level" type="integer" optional="true" min="0" max="3" value="0" label="Amount of debug information given during processing" help=""/>
97 </section> 97 </section>
98 </section> 98 </section>
99 <expand macro="adv_opts_macro"> 99 <expand macro="adv_opts_macro">
100 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 100 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
101 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 101 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
102 <expand macro="list_string_san"/> 102 <expand macro="list_string_san"/>
103 </param> 103 </param>
104 </expand> 104 </expand>
105 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 105 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
106 <option value="out_fm_FLAG">out_fm (Amount of debug information given during processing)</option> 106 <option value="out_fm_FLAG">out_fm (output feature map)</option>
107 <option value="outpairs_FLAG">outpairs (Amount of debug information given during processing)</option> 107 <option value="outpairs_FLAG">outpairs (output file)</option>
108 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 108 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
109 </param> 109 </param>
110 </inputs> 110 </inputs>
111 <outputs> 111 <outputs>
112 <data name="out_cm" label="${tool.name} on ${on_string}: out_cm" format="consensusxml"/> 112 <data name="out_cm" label="${tool.name} on ${on_string}: out_cm" format="consensusxml"/>
125 <expand macro="manutest_Decharger"/> 125 <expand macro="manutest_Decharger"/>
126 </tests> 126 </tests>
127 <help><![CDATA[Decharges and merges different feature charge variants of the same peptide. 127 <help><![CDATA[Decharges and merges different feature charge variants of the same peptide.
128 128
129 129
130 For more information, visit http://www.openms.de/documentation/TOPP_Decharger.html]]></help> 130 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_Decharger.html]]></help>
131 <expand macro="references"/> 131 <expand macro="references"/>
132 </tool> 132 </tool>