Mercurial > repos > galaxyp > openms_decharger

diff Decharger.xml @ 11:2378124da7c4 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author: galaxyp
date: Wed, 15 May 2019 07:58:29 -0400
parents: 91343f74a2d9
children: 95bf997c9cf5
--- a/Decharger.xml	Tue Mar 20 14:32:53 2018 -0400
+++ b/Decharger.xml	Wed May 15 07:58:29 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>Decharger
+  <command detect_errors="aggressive"><![CDATA[Decharger
 
 #if $param_in:
   -in $param_in
@@ -84,7 +84,7 @@
   -algorithm:FeatureDeconvolution:verbose_level $adv_opts.param_algorithm_FeatureDeconvolution_verbose_level
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="featurexml" optional="False" label="input file" help="(-in) "/>
     <param name="param_algorithm_FeatureDeconvolution_charge_min" type="integer" value="1" label="Minimal possible charge" help="(-charge_min) "/>
@@ -133,5 +133,5 @@
   <help>Decharges and merges different feature charge variants of the same peptide.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_Decharger.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_Decharger.html</help>
 </tool>
author	galaxyp
date	Wed, 15 May 2019 07:58:29 -0400
parents	91343f74a2d9
children	95bf997c9cf5