Mercurial > repos > galaxyp > openms_decoydatabase

comparison DecoyDatabase.xml @ 9:2e19b070f997 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:24:38 -0400
parents 7414c55d1bff
children 622bb8ee4942
comparison
equal deleted inserted replaced
8:29f7843b3371 9:2e19b070f997
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>DecoyDatabase 13 <command detect_errors="aggressive"><![CDATA[DecoyDatabase
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
44 #if $adv_opts.adv_opts_selector=='advanced': 44 #if $adv_opts.adv_opts_selector=='advanced':
45 #if $adv_opts.param_force: 45 #if $adv_opts.param_force:
46 -force 46 -force
47 #end if 47 #end if
48 #end if 48 #end if
49 </command> 49 ]]></command>
50 <inputs> 50 <inputs>
51 <param name="param_in" type="data" format="fasta" multiple="true" optional="False" size="30" label="Input FASTA file(s), each containing a database" help="(-in) It is recommended to include a contaminant database as well"> 51 <param name="param_in" type="data" format="fasta" multiple="true" optional="False" size="30" label="Input FASTA file(s), each containing a database" help="(-in) It is recommended to include a contaminant database as well">
52 <sanitizer> 52 <sanitizer>
53 <valid initial="string.printable"> 53 <valid initial="string.printable">
54 <remove value="'"/> 54 <remove value="'"/>
87 </test> 87 </test>
88 </tests> 88 </tests>
89 <help>Create decoy protein DB from forward protein DB. 89 <help>Create decoy protein DB from forward protein DB.
90 90
91 91
92 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DecoyDatabase.html</help> 92 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_DecoyDatabase.html</help>
93 </tool> 93 </tool>