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annotate DeMeanderize.xml @ 9:ba3414c435cc draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
author galaxyp
date Mon, 12 Feb 2018 13:04:56 -0500
parents 86193147dee1
children d9f0079e7116
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
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3 <!--Proposed Tool Section: [Utilities]-->
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4 <tool id="DeMeanderize" name="DeMeanderize" version="2.3.0">
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5 <description>Orders the spectra of MALDI spotting plates correctly.</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">DeMeanderize</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>DeMeanderize
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15 #if $param_in:
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16 -in $param_in
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17 #end if
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18 #if $param_out:
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19 -out $param_out
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20 #end if
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21 #if $param_num_spots_per_row:
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22 -num_spots_per_row $param_num_spots_per_row
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23 #end if
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24 #if $adv_opts.adv_opts_selector=='advanced':
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25 #if $adv_opts.param_RT_distance:
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26 -RT_distance $adv_opts.param_RT_distance
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27 #end if
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28 #if $adv_opts.param_force:
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29 -force
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30 #end if
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31 #end if
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32 </command>
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33 <inputs>
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34 <param name="param_in" type="data" format="mzml" optional="False" label="Input experiment file, containing the wrongly sorted spectra" help="(-in) "/>
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35 <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted" help="(-num_spots_per_row) "/>
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36 <expand macro="advanced_options">
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37 <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help="(-RT_distance) "/>
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38 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
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39 </expand>
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40 </inputs>
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41 <outputs>
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42 <data name="param_out" format="mzml"/>
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43 </outputs>
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44 <help>Orders the spectra of MALDI spotting plates correctly.
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45
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46
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47 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DeMeanderize.html</help>
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48 </tool>