Mercurial > repos > galaxyp > openms_demeanderize
comparison DeMeanderize.xml @ 15:c64f929ec2bf draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
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date | Tue, 13 Oct 2020 20:08:17 +0000 |
parents | 37caa89b3ab1 |
children | 2425a98560f5 |
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14:d45d3394c1c9 | 15:c64f929ec2bf |
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43 <inputs> | 43 <inputs> |
44 <param name="in" argument="-in" type="data" format="mzml" optional="false" label="Input experiment file, containing the wrongly sorted spectra" help=" select mzml data sets(s)"/> | 44 <param name="in" argument="-in" type="data" format="mzml" optional="false" label="Input experiment file, containing the wrongly sorted spectra" help=" select mzml data sets(s)"/> |
45 <param name="num_spots_per_row" argument="-num_spots_per_row" type="integer" optional="true" min="1" value="48" label="Number of spots in one column, until next row is spotted" help=""/> | 45 <param name="num_spots_per_row" argument="-num_spots_per_row" type="integer" optional="true" min="1" value="48" label="Number of spots in one column, until next row is spotted" help=""/> |
46 <expand macro="adv_opts_macro"> | 46 <expand macro="adv_opts_macro"> |
47 <param name="RT_distance" argument="-RT_distance" type="float" optional="true" min="0.0" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help=""/> | 47 <param name="RT_distance" argument="-RT_distance" type="float" optional="true" min="0.0" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help=""/> |
48 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> | 48 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> |
49 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> | 49 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> |
50 <expand macro="list_string_san"/> | 50 <expand macro="list_string_san"/> |
51 </param> | 51 </param> |
52 </expand> | 52 </expand> |
53 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> | 53 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> |
54 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> | 54 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> |
55 </param> | 55 </param> |
56 </inputs> | 56 </inputs> |
57 <outputs> | 57 <outputs> |
58 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> | 58 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> |
65 <expand macro="manutest_DeMeanderize"/> | 65 <expand macro="manutest_DeMeanderize"/> |
66 </tests> | 66 </tests> |
67 <help><![CDATA[Orders the spectra of MALDI spotting plates correctly. | 67 <help><![CDATA[Orders the spectra of MALDI spotting plates correctly. |
68 | 68 |
69 | 69 |
70 For more information, visit http://www.openms.de/documentation/UTILS_DeMeanderize.html]]></help> | 70 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_DeMeanderize.html]]></help> |
71 <expand macro="references"/> | 71 <expand macro="references"/> |
72 </tool> | 72 </tool> |