Mercurial > repos > galaxyp > openms_demeanderize

comparison DeMeanderize.xml @ 11:d9f0079e7116 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:43:10 -0400
parents ba3414c435cc
children 37caa89b3ab1
comparison
equal deleted inserted replaced
10:57cb1a280091 11:d9f0079e7116
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>DeMeanderize 13 <command detect_errors="aggressive"><![CDATA[DeMeanderize
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
27 #end if 27 #end if
28 #if $adv_opts.param_force: 28 #if $adv_opts.param_force:
29 -force 29 -force
30 #end if 30 #end if
31 #end if 31 #end if
32 </command> 32 ]]></command>
33 <inputs> 33 <inputs>
34 <param name="param_in" type="data" format="mzml" optional="False" label="Input experiment file, containing the wrongly sorted spectra" help="(-in) "/> 34 <param name="param_in" type="data" format="mzml" optional="False" label="Input experiment file, containing the wrongly sorted spectra" help="(-in) "/>
35 <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted" help="(-num_spots_per_row) "/> 35 <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted" help="(-num_spots_per_row) "/>
36 <expand macro="advanced_options"> 36 <expand macro="advanced_options">
37 <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help="(-RT_distance) "/> 37 <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help="(-RT_distance) "/>
42 <data name="param_out" format="mzml"/> 42 <data name="param_out" format="mzml"/>
43 </outputs> 43 </outputs>
44 <help>Orders the spectra of MALDI spotting plates correctly. 44 <help>Orders the spectra of MALDI spotting plates correctly.
45 45
46 46
47 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DeMeanderize.html</help> 47 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_DeMeanderize.html</help>
48 </tool> 48 </tool>