Mercurial > repos > galaxyp > openms_digestor

comparison Digestor.xml @ 3:3e8b14ad38c2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author galaxyp
date Wed, 09 Aug 2017 09:21:59 -0400
parents 62341892592a
children 4a795d35e396
comparison
equal deleted inserted replaced
2:f0cdb0f5f5ea 3:3e8b14ad38c2
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="Digestor" name="Digestor" version="2.1.0"> 4 <tool id="Digestor" name="Digestor" version="2.2.0">
5 <description>Digests a protein database in-silico.</description> 5 <description>Digests a protein database in-silico.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">Digestor</token> 7 <token name="@EXECUTABLE@">Digestor</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
58 <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="The number of allowed missed cleavages" help="(-missed_cleavages) "/> 58 <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="The number of allowed missed cleavages" help="(-missed_cleavages) "/>
59 <param name="param_min_length" type="integer" value="6" label="Minimum length of peptide" help="(-min_length) "/> 59 <param name="param_min_length" type="integer" value="6" label="Minimum length of peptide" help="(-min_length) "/>
60 <param name="param_max_length" type="integer" value="40" label="Maximum length of peptide" help="(-max_length) "/> 60 <param name="param_max_length" type="integer" value="40" label="Maximum length of peptide" help="(-max_length) "/>
61 <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The type of digestion enzyme" help="(-enzyme) "> 61 <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The type of digestion enzyme" help="(-enzyme) ">
62 <option value="V8-E">V8-E</option> 62 <option value="V8-E">V8-E</option>
63 <option value="Trypsin/P">Trypsin/P</option>
64 <option value="PepsinA">PepsinA</option>
65 <option value="CNBr">CNBr</option>
66 <option value="Lys-C/P">Lys-C/P</option>
67 <option value="Asp-N_ambic">Asp-N_ambic</option>
68 <option value="Arg-C">Arg-C</option>
69 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
70 <option value="2-iodobenzoate">2-iodobenzoate</option>
71 <option value="Trypsin" selected="true">Trypsin</option>
63 <option value="TrypChymo">TrypChymo</option> 72 <option value="TrypChymo">TrypChymo</option>
64 <option value="no cleavage">no cleavage</option> 73 <option value="Chymotrypsin">Chymotrypsin</option>
65 <option value="Lys-C/P">Lys-C/P</option>
66 <option value="Asp-N">Asp-N</option> 74 <option value="Asp-N">Asp-N</option>
67 <option value="Asp-N_ambic">Asp-N_ambic</option> 75 <option value="Formic_acid">Formic_acid</option>
68 <option value="V8-DE">V8-DE</option> 76 <option value="V8-DE">V8-DE</option>
69 <option value="Lys-C">Lys-C</option> 77 <option value="Lys-C">Lys-C</option>
70 <option value="Trypsin" selected="true">Trypsin</option> 78 <option value="no cleavage">no cleavage</option>
71 <option value="unspecific cleavage">unspecific cleavage</option>
72 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
73 <option value="2-iodobenzoate">2-iodobenzoate</option>
74 <option value="leukocyte elastase">leukocyte elastase</option> 79 <option value="leukocyte elastase">leukocyte elastase</option>
75 <option value="proline endopeptidase">proline endopeptidase</option> 80 <option value="proline endopeptidase">proline endopeptidase</option>
76 <option value="CNBr">CNBr</option> 81 <option value="unspecific cleavage">unspecific cleavage</option>
77 <option value="PepsinA">PepsinA</option>
78 <option value="Trypsin/P">Trypsin/P</option>
79 <option value="Arg-C">Arg-C</option>
80 <option value="Formic_acid">Formic_acid</option>
81 <option value="Chymotrypsin">Chymotrypsin</option>
82 </param> 82 </param>
83 <expand macro="advanced_options"> 83 <expand macro="advanced_options">
84 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> 84 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
85 </expand> 85 </expand>
86 </inputs> 86 </inputs>