Mercurial > repos > galaxyp > openms_digestor

comparison Digestor.xml @ 9:688f329e6583 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:20:34 -0400
parents 4a795d35e396
children 7af5860ae563
comparison
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8:0337d5af48f9 9:688f329e6583
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>Digestor 13 <command detect_errors="aggressive"><![CDATA[Digestor
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
46 #if $adv_opts.adv_opts_selector=='advanced': 46 #if $adv_opts.adv_opts_selector=='advanced':
47 #if $adv_opts.param_force: 47 #if $adv_opts.param_force:
48 -force 48 -force
49 #end if 49 #end if
50 #end if 50 #end if
51 </command> 51 ]]></command>
52 <inputs> 52 <inputs>
53 <param name="param_in" type="data" format="fasta" optional="False" label="input file" help="(-in) "/> 53 <param name="param_in" type="data" format="fasta" optional="False" label="input file" help="(-in) "/>
54 <param name="param_out_type" display="radio" type="select" optional="True" label="Set this if you cannot control the filename of 'out'," help="(-out_type) e.g., in TOPPAS"> 54 <param name="param_out_type" display="radio" type="select" optional="True" label="Set this if you cannot control the filename of 'out'," help="(-out_type) e.g., in TOPPAS">
55 <option value="idXML">idXML</option> 55 <option value="idXML">idXML</option>
56 <option value="fasta">fasta</option> 56 <option value="fasta">fasta</option>
93 <data name="param_out" format="fasta"/> 93 <data name="param_out" format="fasta"/>
94 </outputs> 94 </outputs>
95 <help>Digests a protein database in-silico. 95 <help>Digests a protein database in-silico.
96 96
97 97
98 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_Digestor.html</help> 98 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_Digestor.html</help>
99 </tool> 99 </tool>