Mercurial > repos > galaxyp > openms_digestormotif

comparison DigestorMotif.xml @ 9:861833218c65 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:22:48 -0400
parents 2f207d8b1bce
children bc7bd4710c4e
comparison
equal deleted inserted replaced
8:87b797e33998 9:861833218c65
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>DigestorMotif 13 <command detect_errors="aggressive"><![CDATA[DigestorMotif
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
44 #if $adv_opts.adv_opts_selector=='advanced': 44 #if $adv_opts.adv_opts_selector=='advanced':
45 #if $adv_opts.param_force: 45 #if $adv_opts.param_force:
46 -force 46 -force
47 #end if 47 #end if
48 #end if 48 #end if
49 </command> 49 ]]></command>
50 <inputs> 50 <inputs>
51 <param name="param_in" type="data" format="fasta" optional="False" label="FASTA input file" help="(-in) "/> 51 <param name="param_in" type="data" format="fasta" optional="False" label="FASTA input file" help="(-in) "/>
52 <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="the number of allowed missed cleavages" help="(-missed_cleavages) "/> 52 <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="the number of allowed missed cleavages" help="(-missed_cleavages) "/>
53 <param name="param_mass_accuracy" type="integer" value="1000" label="give your mass accuracy in pp" help="(-mass_accuracy) "/> 53 <param name="param_mass_accuracy" type="integer" value="1000" label="give your mass accuracy in pp" help="(-mass_accuracy) "/>
54 <param name="param_min_length" type="integer" value="6" label="minimum length of peptide" help="(-min_length) "/> 54 <param name="param_min_length" type="integer" value="6" label="minimum length of peptide" help="(-min_length) "/>
96 <data name="param_out" format="idxml"/> 96 <data name="param_out" format="idxml"/>
97 </outputs> 97 </outputs>
98 <help>digests a protein database in-silico 98 <help>digests a protein database in-silico
99 99
100 100
101 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DigestorMotif.html</help> 101 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_DigestorMotif.html</help>
102 </tool> 102 </tool>