Mercurial > repos > galaxyp > openms_erpairfinder

comparison ERPairFinder.xml @ 9:5fd5f1d02251 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:27:29 -0400
parents 3cd0b69ef44b
children 919d5280d1db
comparison
equal deleted inserted replaced
8:3f5cc0e64458 9:5fd5f1d02251
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>ERPairFinder 13 <command detect_errors="aggressive"><![CDATA[ERPairFinder
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_pair_in: 18 #if $param_pair_in:
45 #end if 45 #end if
46 #if $adv_opts.param_force: 46 #if $adv_opts.param_force:
47 -force 47 -force
48 #end if 48 #end if
49 #end if 49 #end if
50 </command> 50 ]]></command>
51 <inputs> 51 <inputs>
52 <param name="param_in" type="data" format="mzml" optional="False" label="Input mzML file containing the ER spectra" help="(-in) "/> 52 <param name="param_in" type="data" format="mzml" optional="False" label="Input mzML file containing the ER spectra" help="(-in) "/>
53 <param name="param_pair_in" type="data" format="txt" optional="False" label="Pair-file in the format: m/z-light m/z-heavy charge rt" help="(-pair_in) "/> 53 <param name="param_pair_in" type="data" format="txt" optional="False" label="Pair-file in the format: m/z-light m/z-heavy charge rt" help="(-pair_in) "/>
54 <param name="param_precursor_mass_tolerance" type="float" min="0.0" optional="True" value="0.3" label="Precursor mass tolerance which is used for the pair finding and the matching of the given pair m/z values to the features" help="(-precursor_mass_tolerance) "/> 54 <param name="param_precursor_mass_tolerance" type="float" min="0.0" optional="True" value="0.3" label="Precursor mass tolerance which is used for the pair finding and the matching of the given pair m/z values to the features" help="(-precursor_mass_tolerance) "/>
55 <expand macro="advanced_options"> 55 <expand macro="advanced_options">
66 <data name="param_feature_out" format="featurexml"/> 66 <data name="param_feature_out" format="featurexml"/>
67 </outputs> 67 </outputs>
68 <help>Util which can be used to evaluate pair ratios on enhanced resolution (zoom) scans. 68 <help>Util which can be used to evaluate pair ratios on enhanced resolution (zoom) scans.
69 69
70 70
71 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_ERPairFinder.html</help> 71 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_ERPairFinder.html</help>
72 </tool> 72 </tool>