Mercurial > repos > galaxyp > openms_erpairfinder
comparison ERPairFinder.xml @ 13:e5e2b0d57f1d draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
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date | Tue, 13 Oct 2020 20:24:38 +0000 |
parents | 919d5280d1db |
children | d6ef464ff66b |
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12:5056b45d484b | 13:e5e2b0d57f1d |
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65 <param name="RT_tolerance" argument="-RT_tolerance" type="float" optional="true" min="1.0" value="200.0" label="Maximal deviation in RT dimension in seconds a feature can have when comparing to the RT values given in the pair file" help=""/> | 65 <param name="RT_tolerance" argument="-RT_tolerance" type="float" optional="true" min="1.0" value="200.0" label="Maximal deviation in RT dimension in seconds a feature can have when comparing to the RT values given in the pair file" help=""/> |
66 <param name="max_charge" argument="-max_charge" type="integer" optional="true" min="1" value="3" label="Maximal charge state features should be search fo" help=""/> | 66 <param name="max_charge" argument="-max_charge" type="integer" optional="true" min="1" value="3" label="Maximal charge state features should be search fo" help=""/> |
67 <param name="intensity_threshold" argument="-intensity_threshold" type="float" optional="true" min="-1.0" value="-1.0" label="Intensity threshold, for the meaning see the documentation of the IsotopeWaveletFeatureFinder documentation" help=""/> | 67 <param name="intensity_threshold" argument="-intensity_threshold" type="float" optional="true" min="-1.0" value="-1.0" label="Intensity threshold, for the meaning see the documentation of the IsotopeWaveletFeatureFinder documentation" help=""/> |
68 <param name="max_isotope" argument="-max_isotope" type="integer" optional="true" min="2" value="3" label="Max isotope of the isotope distribution to be considered" help=""/> | 68 <param name="max_isotope" argument="-max_isotope" type="integer" optional="true" min="2" value="3" label="Max isotope of the isotope distribution to be considered" help=""/> |
69 <param name="expansion_range" argument="-expansion_range" type="float" optional="true" min="0.0" value="5.0" label="The range that is used to extend the isotope distribution with null intensity peaks in Th" help=""/> | 69 <param name="expansion_range" argument="-expansion_range" type="float" optional="true" min="0.0" value="5.0" label="The range that is used to extend the isotope distribution with null intensity peaks in Th" help=""/> |
70 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> | 70 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> |
71 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> | 71 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> |
72 <expand macro="list_string_san"/> | 72 <expand macro="list_string_san"/> |
73 </param> | 73 </param> |
74 </expand> | 74 </expand> |
75 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> | 75 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> |
76 <option value="feature_out_FLAG">feature_out (Enables the test mode (needed for internal use only))</option> | 76 <option value="feature_out_FLAG">feature_out (Output featureXML file, only written if given, skipped otherwise)</option> |
77 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> | 77 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> |
78 </param> | 78 </param> |
79 </inputs> | 79 </inputs> |
80 <outputs> | 80 <outputs> |
81 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/> | 81 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/> |
91 <expand macro="manutest_ERPairFinder"/> | 91 <expand macro="manutest_ERPairFinder"/> |
92 </tests> | 92 </tests> |
93 <help><![CDATA[Util which can be used to evaluate pair ratios on enhanced resolution (zoom) scans. | 93 <help><![CDATA[Util which can be used to evaluate pair ratios on enhanced resolution (zoom) scans. |
94 | 94 |
95 | 95 |
96 For more information, visit http://www.openms.de/documentation/UTILS_ERPairFinder.html]]></help> | 96 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_ERPairFinder.html]]></help> |
97 <expand macro="references"/> | 97 <expand macro="references"/> |
98 </tool> | 98 </tool> |