comparison ERPairFinder.xml @ 13:e5e2b0d57f1d draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:24:38 +0000
parents 919d5280d1db
children d6ef464ff66b
comparison
equal deleted inserted replaced
12:5056b45d484b 13:e5e2b0d57f1d
65 <param name="RT_tolerance" argument="-RT_tolerance" type="float" optional="true" min="1.0" value="200.0" label="Maximal deviation in RT dimension in seconds a feature can have when comparing to the RT values given in the pair file" help=""/> 65 <param name="RT_tolerance" argument="-RT_tolerance" type="float" optional="true" min="1.0" value="200.0" label="Maximal deviation in RT dimension in seconds a feature can have when comparing to the RT values given in the pair file" help=""/>
66 <param name="max_charge" argument="-max_charge" type="integer" optional="true" min="1" value="3" label="Maximal charge state features should be search fo" help=""/> 66 <param name="max_charge" argument="-max_charge" type="integer" optional="true" min="1" value="3" label="Maximal charge state features should be search fo" help=""/>
67 <param name="intensity_threshold" argument="-intensity_threshold" type="float" optional="true" min="-1.0" value="-1.0" label="Intensity threshold, for the meaning see the documentation of the IsotopeWaveletFeatureFinder documentation" help=""/> 67 <param name="intensity_threshold" argument="-intensity_threshold" type="float" optional="true" min="-1.0" value="-1.0" label="Intensity threshold, for the meaning see the documentation of the IsotopeWaveletFeatureFinder documentation" help=""/>
68 <param name="max_isotope" argument="-max_isotope" type="integer" optional="true" min="2" value="3" label="Max isotope of the isotope distribution to be considered" help=""/> 68 <param name="max_isotope" argument="-max_isotope" type="integer" optional="true" min="2" value="3" label="Max isotope of the isotope distribution to be considered" help=""/>
69 <param name="expansion_range" argument="-expansion_range" type="float" optional="true" min="0.0" value="5.0" label="The range that is used to extend the isotope distribution with null intensity peaks in Th" help=""/> 69 <param name="expansion_range" argument="-expansion_range" type="float" optional="true" min="0.0" value="5.0" label="The range that is used to extend the isotope distribution with null intensity peaks in Th" help=""/>
70 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 70 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
71 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 71 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
72 <expand macro="list_string_san"/> 72 <expand macro="list_string_san"/>
73 </param> 73 </param>
74 </expand> 74 </expand>
75 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 75 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
76 <option value="feature_out_FLAG">feature_out (Enables the test mode (needed for internal use only))</option> 76 <option value="feature_out_FLAG">feature_out (Output featureXML file, only written if given, skipped otherwise)</option>
77 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 77 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
78 </param> 78 </param>
79 </inputs> 79 </inputs>
80 <outputs> 80 <outputs>
81 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/> 81 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/>
91 <expand macro="manutest_ERPairFinder"/> 91 <expand macro="manutest_ERPairFinder"/>
92 </tests> 92 </tests>
93 <help><![CDATA[Util which can be used to evaluate pair ratios on enhanced resolution (zoom) scans. 93 <help><![CDATA[Util which can be used to evaluate pair ratios on enhanced resolution (zoom) scans.
94 94
95 95
96 For more information, visit http://www.openms.de/documentation/UTILS_ERPairFinder.html]]></help> 96 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_ERPairFinder.html]]></help>
97 <expand macro="references"/> 97 <expand macro="references"/>
98 </tool> 98 </tool>