Mercurial > repos > galaxyp > openms_featurefindercentroided

comparison FeatureFinderCentroided.xml @ 13:b57f420a47b9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:03:17 +0000
parents 6eda2adf7613
children 1a709ba66f2f
comparison
equal deleted inserted replaced
12:b5ede3ff996c 13:b57f420a47b9
118 <param name="mz_tolerance" argument="-algorithm:user-seed:mz_tolerance" type="float" optional="true" min="0.0" value="1.1" label="Allowed m/z deviation of seeds from the user-specified seed position" help=""/> 118 <param name="mz_tolerance" argument="-algorithm:user-seed:mz_tolerance" type="float" optional="true" min="0.0" value="1.1" label="Allowed m/z deviation of seeds from the user-specified seed position" help=""/>
119 <param name="min_score" argument="-algorithm:user-seed:min_score" type="float" optional="true" min="0.0" max="1.0" value="0.5" label="Overwrites 'seed:min_score' for user-specified seeds" help="The cutoff is typically a bit lower in this case"/> 119 <param name="min_score" argument="-algorithm:user-seed:min_score" type="float" optional="true" min="0.0" max="1.0" value="0.5" label="Overwrites 'seed:min_score' for user-specified seeds" help="The cutoff is typically a bit lower in this case"/>
120 </section> 120 </section>
121 </section> 121 </section>
122 <expand macro="adv_opts_macro"> 122 <expand macro="adv_opts_macro">
123 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 123 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
124 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 124 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
125 <expand macro="list_string_san"/> 125 <expand macro="list_string_san"/>
126 </param> 126 </param>
127 </expand> 127 </expand>
128 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 128 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
129 <option value="out_mzq_FLAG">out_mzq (Overwrites 'seed:min_score' for user-specified seeds)</option> 129 <option value="out_mzq_FLAG">out_mzq (Optional output file of MzQuantML)</option>
130 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 130 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
131 </param> 131 </param>
132 </inputs> 132 </inputs>
133 <outputs> 133 <outputs>
134 <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml"/> 134 <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml"/>
144 <expand macro="manutest_FeatureFinderCentroided"/> 144 <expand macro="manutest_FeatureFinderCentroided"/>
145 </tests> 145 </tests>
146 <help><![CDATA[Detects two-dimensional features in LC-MS data. 146 <help><![CDATA[Detects two-dimensional features in LC-MS data.
147 147
148 148
149 For more information, visit http://www.openms.de/documentation/TOPP_FeatureFinderCentroided.html]]></help> 149 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_FeatureFinderCentroided.html]]></help>
150 <expand macro="references"/> 150 <expand macro="references"/>
151 </tool> 151 </tool>