Mercurial > repos > galaxyp > openms_featurefindermetabo

comparison FeatureFinderMetabo.xml @ 7:1473223a9595 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
author galaxyp
date Mon, 12 Feb 2018 13:01:01 -0500
parents 514ecafed38f
children b6e4da302f66
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6:e8f6b4cfe829 7:1473223a9595
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Quantitation]--> 3 <!--Proposed Tool Section: [Quantitation]-->
4 <tool id="FeatureFinderMetabo" name="FeatureFinderMetabo" version="2.2.0"> 4 <tool id="FeatureFinderMetabo" name="FeatureFinderMetabo" version="2.3.0">
5 <description>Assembles metabolite features from centroided (LC-)MS data using the mass trace approach.</description> 5 <description>Assembles metabolite features from centroided (LC-)MS data using the mass trace approach.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">FeatureFinderMetabo</token> 7 <token name="@EXECUTABLE@">FeatureFinderMetabo</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
19 -out $param_out 19 -out $param_out
20 #end if
21 #if $param_out_chrom:
22 -out_chrom $param_out_chrom
20 #end if 23 #end if
21 #if $param_algorithm_common_noise_threshold_int: 24 #if $param_algorithm_common_noise_threshold_int:
22 -algorithm:common:noise_threshold_int $param_algorithm_common_noise_threshold_int 25 -algorithm:common:noise_threshold_int $param_algorithm_common_noise_threshold_int
23 #end if 26 #end if
24 #if $param_algorithm_common_chrom_peak_snr: 27 #if $param_algorithm_common_chrom_peak_snr:
201 </param> 204 </param>
202 </expand> 205 </expand>
203 </inputs> 206 </inputs>
204 <outputs> 207 <outputs>
205 <data name="param_out" format="featurexml"/> 208 <data name="param_out" format="featurexml"/>
209 <data name="param_out_chrom" format="mzml"/>
206 </outputs> 210 </outputs>
207 <help>Assembles metabolite features from centroided (LC-)MS data using the mass trace approach. 211 <help>Assembles metabolite features from centroided (LC-)MS data using the mass trace approach.
208 212
209 213
210 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureFinderMetabo.html</help> 214 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureFinderMetabo.html</help>