Mercurial > repos > galaxyp > openms_featurefindermetabo
diff FeatureFinderMetabo.xml @ 13:00080bb4299e draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
---|---|
date | Tue, 13 Oct 2020 20:38:53 +0000 |
parents | 21dc135961b5 |
children | 2451315543f9 |
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--- a/FeatureFinderMetabo.xml Thu Sep 24 12:09:08 2020 +0000 +++ b/FeatureFinderMetabo.xml Tue Oct 13 20:38:53 2020 +0000 @@ -88,7 +88,7 @@ <option value="auto">auto</option> <expand macro="list_string_san"/> </param> - <param name="min_fwhm" argument="-algorithm:epd:min_fwhm" type="float" optional="true" value="3.0" label="Minimum full-width-at-half-maximum of chromatographic peaks (in seconds)" help="Ignored if parameter width_filtering is off or auto"/> + <param name="min_fwhm" argument="-algorithm:epd:min_fwhm" type="float" optional="true" value="1.0" label="Minimum full-width-at-half-maximum of chromatographic peaks (in seconds)" help="Ignored if parameter width_filtering is off or auto"/> <param name="max_fwhm" argument="-algorithm:epd:max_fwhm" type="float" optional="true" value="60.0" label="Maximum full-width-at-half-maximum of chromatographic peaks (in seconds)" help="Ignored if parameter width_filtering is off or auto"/> <param name="masstrace_snr_filtering" argument="-algorithm:epd:masstrace_snr_filtering" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Apply post-filtering by signal-to-noise ratio after smoothing" help=""/> </section> @@ -117,13 +117,13 @@ </section> </section> <expand macro="adv_opts_macro"> - <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> + <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> <expand macro="list_string_san"/> </param> </expand> - <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> - <option value="out_chrom_FLAG">out_chrom (Elements assumes to be present in the sample (this influences isotope detection))</option> + <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> + <option value="out_chrom_FLAG">out_chrom (Optional mzML file with chromatograms)</option> <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> </param> </inputs> @@ -143,6 +143,6 @@ <help><![CDATA[Assembles metabolite features from centroided (LC-)MS data using the mass trace approach. -For more information, visit http://www.openms.de/documentation/TOPP_FeatureFinderMetabo.html]]></help> +For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_FeatureFinderMetabo.html]]></help> <expand macro="references"/> </tool>