Mercurial > repos > galaxyp > openms_featurefindermrm

comparison FeatureFinderMRM.xml @ 9:d0e82da46b78 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 07:53:41 -0400
parents 7aac44dfb2b8
children 90f3670ec66b
comparison
equal deleted inserted replaced
8:19db772fca06 9:d0e82da46b78
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>FeatureFinderMRM 13 <command detect_errors="aggressive"><![CDATA[FeatureFinderMRM
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
39 #end if 39 #end if
40 #if $adv_opts.param_algorithm_write_debuginfo: 40 #if $adv_opts.param_algorithm_write_debuginfo:
41 -algorithm:write_debuginfo 41 -algorithm:write_debuginfo
42 #end if 42 #end if
43 #end if 43 #end if
44 </command> 44 ]]></command>
45 <inputs> 45 <inputs>
46 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> 46 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
47 <param name="param_algorithm_min_rt_distance" type="float" min="0.0" optional="True" value="10.0" label="Minimal distance of MRM features in seconds" help="(-min_rt_distance) "/> 47 <param name="param_algorithm_min_rt_distance" type="float" min="0.0" optional="True" value="10.0" label="Minimal distance of MRM features in seconds" help="(-min_rt_distance) "/>
48 <param name="param_algorithm_min_signal_to_noise_ratio" type="float" min="0.0" optional="True" value="2.0" label="Minimal S/N ratio a peak must have to be taken into account" help="(-min_signal_to_noise_ratio) Set to zero if the MRM-traces contains mostly signals, and no noise"/> 48 <param name="param_algorithm_min_signal_to_noise_ratio" type="float" min="0.0" optional="True" value="2.0" label="Minimal S/N ratio a peak must have to be taken into account" help="(-min_signal_to_noise_ratio) Set to zero if the MRM-traces contains mostly signals, and no noise"/>
49 <expand macro="advanced_options"> 49 <expand macro="advanced_options">
58 <data name="param_out" format="featurexml"/> 58 <data name="param_out" format="featurexml"/>
59 </outputs> 59 </outputs>
60 <help>Detects two-dimensional features in LC-MS data. 60 <help>Detects two-dimensional features in LC-MS data.
61 61
62 62
63 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureFinderMRM.html</help> 63 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FeatureFinderMRM.html</help>
64 </tool> 64 </tool>