Mercurial > repos > galaxyp > openms_featurefindermultiplex

comparison FeatureFinderMultiplex.xml @ 9:954c0413acfb draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
author galaxyp
date Tue, 20 Mar 2018 14:44:35 -0400
parents 45fffe3eb041
children e8651e585689
comparison
equal deleted inserted replaced
8:45fffe3eb041 9:954c0413acfb
129 #end if 129 #end if
130 #if $adv_opts.param_labels_ICPL10: 130 #if $adv_opts.param_labels_ICPL10:
131 -labels:ICPL10 $adv_opts.param_labels_ICPL10 131 -labels:ICPL10 $adv_opts.param_labels_ICPL10
132 #end if 132 #end if
133 #end if 133 #end if
134 -threads "\${GALAXY_SLOTS:-1}"
134 </command> 135 </command>
135 <inputs> 136 <inputs>
136 <param name="param_in" type="data" format="mzml" optional="False" label="LC-MS dataset in centroid or profile mode" help="(-in) "/> 137 <param name="param_in" type="data" format="mzml" optional="False" label="LC-MS dataset in centroid or profile mode" help="(-in) "/>
137 <param name="param_algorithm_labels" type="text" size="30" value="[][Lys8,Arg10]" label="Labels used for labelling the samples" help="(-labels) [...] specifies the labels for a single sample. For example &lt;br&gt; &lt;br&gt;[][Lys8,Arg10] ... SILAC &lt;br&gt;[][Lys4,Arg6][Lys8,Arg10] ... triple-SILAC &lt;br&gt;[Dimethyl0][Dimethyl6] ... Dimethyl &lt;br&gt;[Dimethyl0][Dimethyl4][Dimethyl8] ... triple Dimethyl &lt;br&gt;[ICPL0][ICPL4][ICPL6][ICPL10] ... ICPL"> 138 <param name="param_algorithm_labels" type="text" size="30" value="[][Lys8,Arg10]" label="Labels used for labelling the samples" help="(-labels) [...] specifies the labels for a single sample. For example &lt;br&gt; &lt;br&gt;[][Lys8,Arg10] ... SILAC &lt;br&gt;[][Lys4,Arg6][Lys8,Arg10] ... triple-SILAC &lt;br&gt;[Dimethyl0][Dimethyl6] ... Dimethyl &lt;br&gt;[Dimethyl0][Dimethyl4][Dimethyl8] ... triple Dimethyl &lt;br&gt;[ICPL0][ICPL4][ICPL6][ICPL10] ... ICPL">
138 <sanitizer> 139 <sanitizer>
198 <param name="param_labels_ICPL6" type="float" min="0.0" optional="True" value="111.041593" label="ICPL:13C(6) | H(3) 13C(6) N O | unimod #364" help="(-ICPL6) "/> 199 <param name="param_labels_ICPL6" type="float" min="0.0" optional="True" value="111.041593" label="ICPL:13C(6) | H(3) 13C(6) N O | unimod #364" help="(-ICPL6) "/>
199 <param name="param_labels_ICPL10" type="float" min="0.0" optional="True" value="115.0667" label="ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866" help="(-ICPL10) "/> 200 <param name="param_labels_ICPL10" type="float" min="0.0" optional="True" value="115.0667" label="ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866" help="(-ICPL10) "/>
200 </expand> 201 </expand>
201 </inputs> 202 </inputs>
202 <outputs> 203 <outputs>
203 <data name="param_out" format="consensusxml"/> 204 <data name="param_out" format="consensusxml" label="${tool.name} on ${on_string}: consensusxml"/>
204 <data name="param_out_features" format="featurexml"/> 205 <data name="param_out_features" format="featurexml" label="${tool.name} on ${on_string}: featurexml"/>
205 <data name="param_out_mzq" format="mzq"/> 206 <data name="param_out_mzq" format="mzq" label="${tool.name} on ${on_string}: mzq"/>
206 </outputs> 207 </outputs>
207 <help>Determination of peak ratios in LC-MS data 208 <help>Determination of peak ratios in LC-MS data
208 209
209 210
210 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureFinderMultiplex.html</help> 211 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureFinderMultiplex.html</help>