Mercurial > repos > galaxyp > openms_featurefindersuperhirn
comparison FeatureFinderSuperHirn.xml @ 9:f0ae67837629 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
---|---|
date | Wed, 15 May 2019 08:02:53 -0400 |
parents | cb6efad08345 |
children | c42075bb5123 |
comparison
equal
deleted
inserted
replaced
8:2eac00647b18 | 9:f0ae67837629 |
---|---|
8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>FeatureFinderSuperHirn | 13 <command detect_errors="aggressive"><![CDATA[FeatureFinderSuperHirn |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
118 #if $adv_opts.adv_opts_selector=='advanced': | 118 #if $adv_opts.adv_opts_selector=='advanced': |
119 #if $adv_opts.param_force: | 119 #if $adv_opts.param_force: |
120 -force | 120 -force |
121 #end if | 121 #end if |
122 #end if | 122 #end if |
123 </command> | 123 ]]></command> |
124 <inputs> | 124 <inputs> |
125 <param name="param_in" type="data" format="mzml" optional="False" label="input profile data file" help="(-in) "/> | 125 <param name="param_in" type="data" format="mzml" optional="False" label="input profile data file" help="(-in) "/> |
126 <param name="param_algorithm_centroiding_active" display="radio" type="boolean" truevalue="-algorithm:centroiding:active" falsevalue="" checked="false" optional="True" label="MS1 data centroid data" help="(-active) "/> | 126 <param name="param_algorithm_centroiding_active" display="radio" type="boolean" truevalue="-algorithm:centroiding:active" falsevalue="" checked="false" optional="True" label="MS1 data centroid data" help="(-active) "/> |
127 <param name="param_algorithm_centroiding_window_width" type="integer" min="1" optional="True" value="5" label="Centroid window width" help="(-window_width) "/> | 127 <param name="param_algorithm_centroiding_window_width" type="integer" min="1" optional="True" value="5" label="Centroid window width" help="(-window_width) "/> |
128 <param name="param_algorithm_centroiding_absolute_isotope_mass_precision" type="float" min="0.0" optional="True" value="0.01" label="Absolute isotope mass precision (Da)" help="(-absolute_isotope_mass_precision) "/> | 128 <param name="param_algorithm_centroiding_absolute_isotope_mass_precision" type="float" min="0.0" optional="True" value="0.01" label="Absolute isotope mass precision (Da)" help="(-absolute_isotope_mass_precision) "/> |
171 <data name="param_out" format="featurexml"/> | 171 <data name="param_out" format="featurexml"/> |
172 </outputs> | 172 </outputs> |
173 <help>Finds mass spectrometric features in mass spectra. | 173 <help>Finds mass spectrometric features in mass spectra. |
174 | 174 |
175 | 175 |
176 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureFinderSuperHirn.html</help> | 176 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FeatureFinderSuperHirn.html</help> |
177 </tool> | 177 </tool> |