Mercurial > repos > galaxyp > openms_featurelinkerunlabeled
diff FeatureLinkerUnlabeled.xml @ 3:d21258431e2a draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
| author | galaxyp |
|---|---|
| date | Wed, 09 Aug 2017 09:57:53 -0400 |
| parents | fad4af2df6a4 |
| children | df7f4ac9a2c6 |
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--- a/FeatureLinkerUnlabeled.xml Thu Apr 27 13:21:01 2017 -0400 +++ b/FeatureLinkerUnlabeled.xml Wed Aug 09 09:57:53 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Map Alignment]--> -<tool id="FeatureLinkerUnlabeled" name="FeatureLinkerUnlabeled" version="2.1.0"> +<tool id="FeatureLinkerUnlabeled" name="FeatureLinkerUnlabeled" version="2.2.0"> <description>Groups corresponding features from multiple maps.</description> <macros> <token name="@EXECUTABLE@">FeatureLinkerUnlabeled</token> @@ -67,6 +67,14 @@ #if $adv_opts.param_algorithm_distance_intensity_weight: -algorithm:distance_intensity:weight $adv_opts.param_algorithm_distance_intensity_weight #end if + #if $adv_opts.param_algorithm_distance_intensity_log_transform: + -algorithm:distance_intensity:log_transform + #if " " in str($adv_opts.param_algorithm_distance_intensity_log_transform): + "$adv_opts.param_algorithm_distance_intensity_log_transform" + #else + $adv_opts.param_algorithm_distance_intensity_log_transform + #end if +#end if #end if </command> <inputs> @@ -96,6 +104,10 @@ <param name="param_algorithm_distance_MZ_weight" type="float" min="0.0" optional="True" value="1.0" label="Final m/z distances are weighted by this facto" help="(-weight) "/> <param name="param_algorithm_distance_intensity_exponent" type="float" min="0.0" optional="True" value="1.0" label="Differences in relative intensity ([0-1]) are raised to this power (using 1 or 2 will be fast, everything else is REALLY slow)" help="(-exponent) "/> <param name="param_algorithm_distance_intensity_weight" type="float" min="0.0" optional="True" value="0.0" label="Final intensity distances are weighted by this facto" help="(-weight) "/> + <param name="param_algorithm_distance_intensity_log_transform" display="radio" type="select" optional="False" value="disabled" label="Log-transform intensities?" help="(-log_transform) If disabled, d = |int_f2 - int_f1| / int_max. If enabled, d = |log(int_f2 + 1) - log(int_f1 + 1)| / log(int_max + 1))"> + <option value="enabled">enabled</option> + <option value="disabled" selected="true">disabled</option> + </param> </expand> </inputs> <outputs>