--- a/FeatureLinkerUnlabeled.xml	Thu Jan 11 18:16:46 2018 -0500
+++ b/FeatureLinkerUnlabeled.xml	Mon Feb 12 12:59:10 2018 -0500
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Map Alignment]-->
-<tool id="FeatureLinkerUnlabeled" name="FeatureLinkerUnlabeled" version="2.2.0">
+<tool id="FeatureLinkerUnlabeled" name="FeatureLinkerUnlabeled" version="2.3.0">
   <description>Groups corresponding features from multiple maps.</description>
   <macros>
     <token name="@EXECUTABLE@">FeatureLinkerUnlabeled</token>
@@ -19,6 +19,9 @@
 #if $param_out:
   -out $param_out
 #end if
+#if $param_design:
+  -design $param_design
+#end if
 #if $param_keep_subelements:
   -keep_subelements
 #end if
@@ -86,6 +89,7 @@
         </valid>
       </sanitizer>
     </param>
+    <param name="param_design" type="data" format="tabular" optional="True" label="input file containing the experimental design" help="(-design) "/>
     <param name="param_keep_subelements" display="radio" type="boolean" truevalue="-keep_subelements" falsevalue="" checked="false" optional="True" label="For consensusXML input only: If set, the sub-features of the inputs are transferred to the output" help="(-keep_subelements) "/>
     <param name="param_algorithm_second_nearest_gap" type="float" min="1.0" optional="True" value="2.0" label="Only link features whose distance to the second nearest neighbors (for both sides) is larger by 'second_nearest_gap' than the distance between the matched pair itself" help="(-second_nearest_gap) "/>
     <param name="param_algorithm_use_identifications" display="radio" type="boolean" truevalue="-algorithm:use_identifications" falsevalue="" checked="false" optional="True" label="Never link features that are annotated with different peptides (features without ID's always match; only the best hit per peptide identification is considered)" help="(-use_identifications) "/>