Mercurial > repos > galaxyp > openms_ffeval

comparison FFEval.xml @ 13:a02af506fe40 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:18:08 +0000
parents 12513e823fd0
children 71b4a047afe5
comparison
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12:6fb2f604537c 13:a02af506fe40
77 <param name="rt_tol" argument="-rt_tol" type="float" optional="true" min="0.0" value="0.3" label="Allowed tolerance of RT relative to average feature RT span" help=""/> 77 <param name="rt_tol" argument="-rt_tol" type="float" optional="true" min="0.0" value="0.3" label="Allowed tolerance of RT relative to average feature RT span" help=""/>
78 <param name="rt_tol_abs" argument="-rt_tol_abs" type="float" optional="true" min="-1.0" value="-1.0" label="Allowed absolute tolerance of RT (overwrites 'rt_tol' if set above zero)" help=""/> 78 <param name="rt_tol_abs" argument="-rt_tol_abs" type="float" optional="true" min="-1.0" value="-1.0" label="Allowed absolute tolerance of RT (overwrites 'rt_tol' if set above zero)" help=""/>
79 <param name="mz_tol" argument="-mz_tol" type="float" optional="true" min="0.0" value="0.25" label="Allowed tolerance in m/z (is divided by charge)" help=""/> 79 <param name="mz_tol" argument="-mz_tol" type="float" optional="true" min="0.0" value="0.25" label="Allowed tolerance in m/z (is divided by charge)" help=""/>
80 <param name="abort_reasons" argument="-abort_reasons" type="data" format="featurexml" optional="true" label="Feature file containing seeds with abort reasons" help=" select featurexml data sets(s)"/> 80 <param name="abort_reasons" argument="-abort_reasons" type="data" format="featurexml" optional="true" label="Feature file containing seeds with abort reasons" help=" select featurexml data sets(s)"/>
81 <expand macro="adv_opts_macro"> 81 <expand macro="adv_opts_macro">
82 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 82 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
83 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 83 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
84 <expand macro="list_string_san"/> 84 <expand macro="list_string_san"/>
85 </param> 85 </param>
86 </expand> 86 </expand>
87 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false"> 87 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
88 <option value="out_FLAG">out (Enables the test mode (needed for internal use only))</option> 88 <option value="out_FLAG">out (Feature output file)</option>
89 <option value="out_roc_FLAG">out_roc (Enables the test mode (needed for internal use only))</option> 89 <option value="out_roc_FLAG">out_roc (If given, a ROC curve file is created (ROC points based on intensity threshold))</option>
90 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 90 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
91 </param> 91 </param>
92 </inputs> 92 </inputs>
93 <outputs> 93 <outputs>
94 <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml"> 94 <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml">
109 <expand macro="manutest_FFEval"/> 109 <expand macro="manutest_FFEval"/>
110 </tests> 110 </tests>
111 <help><![CDATA[Evaluation tool for feature detection algorithms. 111 <help><![CDATA[Evaluation tool for feature detection algorithms.
112 112
113 113
114 For more information, visit http://www.openms.de/documentation/UTILS_FFEval.html]]></help> 114 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_FFEval.html]]></help>
115 <expand macro="references"/> 115 <expand macro="references"/>
116 </tool> 116 </tool>