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comparison FFEval.xml @ 9:ff14c17ee29c draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:17:09 -0400
parents 72ea58848d27
children 12513e823fd0
comparison
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8:1f91c09ba091 9:ff14c17ee29c
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>FFEval 13 <command detect_errors="aggressive"><![CDATA[FFEval
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_truth: 18 #if $param_truth:
39 #if $adv_opts.adv_opts_selector=='advanced': 39 #if $adv_opts.adv_opts_selector=='advanced':
40 #if $adv_opts.param_force: 40 #if $adv_opts.param_force:
41 -force 41 -force
42 #end if 42 #end if
43 #end if 43 #end if
44 </command> 44 ]]></command>
45 <inputs> 45 <inputs>
46 <param name="param_in" type="data" format="featurexml" optional="False" label="Feature input file, which contains the data to be tested against the truth file" help="(-in) "/> 46 <param name="param_in" type="data" format="featurexml" optional="False" label="Feature input file, which contains the data to be tested against the truth file" help="(-in) "/>
47 <param name="param_truth" type="data" format="featurexml" optional="False" label="Truth feature file that defines what features should be found" help="(-truth) "/> 47 <param name="param_truth" type="data" format="featurexml" optional="False" label="Truth feature file that defines what features should be found" help="(-truth) "/>
48 <param name="param_rt_tol" type="float" min="0.0" optional="True" value="0.3" label="Allowed tolerance of RT relative to average feature RT span" help="(-rt_tol) "/> 48 <param name="param_rt_tol" type="float" min="0.0" optional="True" value="0.3" label="Allowed tolerance of RT relative to average feature RT span" help="(-rt_tol) "/>
49 <param name="param_rt_tol_abs" type="float" min="-1.0" optional="True" value="-1.0" label="Allowed absolute tolerance of RT (overwrites 'rt_tol' if set above zero)" help="(-rt_tol_abs) "/> 49 <param name="param_rt_tol_abs" type="float" min="-1.0" optional="True" value="-1.0" label="Allowed absolute tolerance of RT (overwrites 'rt_tol' if set above zero)" help="(-rt_tol_abs) "/>
58 <data name="param_out_roc" format="tabular"/> 58 <data name="param_out_roc" format="tabular"/>
59 </outputs> 59 </outputs>
60 <help>Evaluation tool for feature detection algorithms. 60 <help>Evaluation tool for feature detection algorithms.
61 61
62 62
63 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_FFEval.html</help> 63 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_FFEval.html</help>
64 </tool> 64 </tool>