Mercurial > repos > galaxyp > openms_ffeval

diff FFEval.xml @ 13:a02af506fe40 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:18:08 +0000
parents 12513e823fd0
children 71b4a047afe5
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--- a/FFEval.xml	Thu Sep 24 12:28:46 2020 +0000
+++ b/FFEval.xml	Tue Oct 13 20:18:08 2020 +0000
@@ -79,14 +79,14 @@
     <param name="mz_tol" argument="-mz_tol" type="float" optional="true" min="0.0" value="0.25" label="Allowed tolerance in m/z (is divided by charge)" help=""/>
     <param name="abort_reasons" argument="-abort_reasons" type="data" format="featurexml" optional="true" label="Feature file containing seeds with abort reasons" help=" select featurexml data sets(s)"/>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false">
-      <option value="out_FLAG">out (Enables the test mode (needed for internal use only))</option>
-      <option value="out_roc_FLAG">out_roc (Enables the test mode (needed for internal use only))</option>
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
+      <option value="out_FLAG">out (Feature output file)</option>
+      <option value="out_roc_FLAG">out_roc (If given, a ROC curve file is created (ROC points based on intensity threshold))</option>
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -111,6 +111,6 @@
   <help><![CDATA[Evaluation tool for feature detection algorithms.
 
 
-For more information, visit http://www.openms.de/documentation/UTILS_FFEval.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_FFEval.html]]></help>
   <expand macro="references"/>
 </tool>