# HG changeset patch # User galaxyp # Date 1515710877 18000 # Node ID 51a9d7ae037a5b7c28af17e5c9a7d66e8766b882 # Parent 8c318ac73b95b7a8fa38e2f8e03a8bbe49d34e1c planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8a95bc868914fb41c7452907f73a9273b03286ab diff -r 8c318ac73b95 -r 51a9d7ae037a readme.md --- a/readme.md Sat Oct 28 05:08:05 2017 -0400 +++ b/readme.md Thu Jan 11 17:47:57 2018 -0500 @@ -117,7 +117,14 @@ [...] ]]> ``` - + + * In Xtandem Converter and probably in others: + + ``` + #if str($param_missed_cleavages) != '': + ``` + This is because integers needs to be compared as string otherwise `0` becomes `false`. + * In `MetaProSIP.xml` add `R` as a requirement: ``` @@ -164,7 +171,8 @@ ``` - * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in Galaxy-stable and are therefore in `SKIP_TOOLS_FILES.txt`: + * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in + by the automatic conversion step and are therefore in `SKIP_TOOLS_FILES.txt`: * SeedListGenerator * SpecLibSearcher * MapAlignerIdentification PKMWR$}* ampvis2_load-8d77d277996e/.hg_archival.txtUTePKMWgm\b8" ampvis2_load-8d77d277996e/load.xmlUTePKMW| 3$ ampvis2_load-8d77d277996e/macros.xmlUTePKMWܰ|B ampvis2_load-8d77d277996e/test-data/AalborgWWTPs-boxplot-group.pdfUTePKMWBK!B 4ampvis2_load-8d77d277996e/test-data/AalborgWWTPs-boxplot-point.pdfUTePKMW${!#&< ampvis2_load-8d77d277996e/test-data/AalborgWWTPs-boxplot.pdfUTePKMW+#k= ampvis2_load-8d77d277996e/test-data/AalborgWWTPs-complete.rdsUTePK"