Mercurial > repos > galaxyp > openms_fidoadapter

comparison FidoAdapter.xml @ 13:c3a5cd016963 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:51:10 +0000
parents b552ec8456e7
children 1595601708ec
comparison
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12:39a1dd32a40d 13:c3a5cd016963
62 <option value="relaxed">relaxed</option> 62 <option value="relaxed">relaxed</option>
63 <option value="sloppy">sloppy</option> 63 <option value="sloppy">sloppy</option>
64 <expand macro="list_string_san"/> 64 <expand macro="list_string_san"/>
65 </param> 65 </param>
66 <param name="log2_states_precalc" argument="-log2_states_precalc" type="integer" optional="true" min="0" value="0" label="Like 'log2_states', but allows to set a separate limit for the precalculation" help=""/> 66 <param name="log2_states_precalc" argument="-log2_states_precalc" type="integer" optional="true" min="0" value="0" label="Like 'log2_states', but allows to set a separate limit for the precalculation" help=""/>
67 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 67 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
68 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 68 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
69 <expand macro="list_string_san"/> 69 <expand macro="list_string_san"/>
70 </param> 70 </param>
71 </expand> 71 </expand>
72 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 72 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
73 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 73 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
74 </param> 74 </param>
75 </inputs> 75 </inputs>
76 <outputs> 76 <outputs>
77 <data name="out" label="${tool.name} on ${on_string}: out" format="idxml"/> 77 <data name="out" label="${tool.name} on ${on_string}: out" format="idxml"/>
84 <expand macro="manutest_FidoAdapter"/> 84 <expand macro="manutest_FidoAdapter"/>
85 </tests> 85 </tests>
86 <help><![CDATA[Runs the protein inference engine Fido. 86 <help><![CDATA[Runs the protein inference engine Fido.
87 87
88 88
89 For more information, visit http://www.openms.de/documentation/TOPP_FidoAdapter.html]]></help> 89 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_FidoAdapter.html]]></help>
90 <expand macro="references"/> 90 <expand macro="references"/>
91 </tool> 91 </tool>