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comparison FileFilter.xml @ 1:020fc2600133 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
author galaxyp
date Tue, 18 Apr 2017 16:06:14 -0400
parents fa19593551c6
children 59adb20eb08a
comparison
equal deleted inserted replaced
0:fa19593551c6 1:020fc2600133
85 #end if 85 #end if
86 #if $param_peak_options_remove_chromatograms: 86 #if $param_peak_options_remove_chromatograms:
87 -peak_options:remove_chromatograms 87 -peak_options:remove_chromatograms
88 #end if 88 #end if
89 #if $param_peak_options_mz_precision: 89 #if $param_peak_options_mz_precision:
90 -peak_options:mz_precision $param_peak_options_mz_precision 90 -peak_options:mz_precision
91 #if " " in str($param_peak_options_mz_precision):
92 "$param_peak_options_mz_precision"
93 #else
94 $param_peak_options_mz_precision
95 #end if
91 #end if 96 #end if
92 #if $param_peak_options_int_precision: 97 #if $param_peak_options_int_precision:
93 -peak_options:int_precision $param_peak_options_int_precision 98 -peak_options:int_precision
99 #if " " in str($param_peak_options_int_precision):
100 "$param_peak_options_int_precision"
101 #else
102 $param_peak_options_int_precision
103 #end if
94 #end if 104 #end if
95 #if $param_peak_options_indexed_file: 105 #if $param_peak_options_indexed_file:
96 -peak_options:indexed_file 106 -peak_options:indexed_file
97 #end if 107 #end if
98 #if $param_peak_options_numpress_masstime: 108 #if $param_peak_options_numpress_masstime:
99 -peak_options:numpress:masstime $param_peak_options_numpress_masstime 109 -peak_options:numpress:masstime
110 #if " " in str($param_peak_options_numpress_masstime):
111 "$param_peak_options_numpress_masstime"
112 #else
113 $param_peak_options_numpress_masstime
114 #end if
100 #end if 115 #end if
101 #if $param_peak_options_numpress_masstime_error: 116 #if $param_peak_options_numpress_masstime_error:
102 -peak_options:numpress:masstime_error $param_peak_options_numpress_masstime_error 117 -peak_options:numpress:masstime_error $param_peak_options_numpress_masstime_error
103 #end if 118 #end if
104 #if $param_peak_options_numpress_intensity: 119 #if $param_peak_options_numpress_intensity:
105 -peak_options:numpress:intensity $param_peak_options_numpress_intensity 120 -peak_options:numpress:intensity
121 #if " " in str($param_peak_options_numpress_intensity):
122 "$param_peak_options_numpress_intensity"
123 #else
124 $param_peak_options_numpress_intensity
125 #end if
106 #end if 126 #end if
107 #if $param_peak_options_numpress_intensity_error: 127 #if $param_peak_options_numpress_intensity_error:
108 -peak_options:numpress:intensity_error $param_peak_options_numpress_intensity_error 128 -peak_options:numpress:intensity_error $param_peak_options_numpress_intensity_error
109 #end if 129 #end if
110 #if $param_spectra_remove_zoom: 130 #if $param_spectra_remove_zoom:
181 #end if 201 #end if
182 #if $param_consensus_map_and: 202 #if $param_consensus_map_and:
183 -consensus:map_and 203 -consensus:map_and
184 #end if 204 #end if
185 #if $param_consensus_blackorwhitelist_blacklist: 205 #if $param_consensus_blackorwhitelist_blacklist:
186 -consensus:blackorwhitelist:blacklist $param_consensus_blackorwhitelist_blacklist 206 -consensus:blackorwhitelist:blacklist
207 #if " " in str($param_consensus_blackorwhitelist_blacklist):
208 "$param_consensus_blackorwhitelist_blacklist"
209 #else
210 $param_consensus_blackorwhitelist_blacklist
211 #end if
187 #end if 212 #end if
188 #if $param_consensus_blackorwhitelist_file: 213 #if $param_consensus_blackorwhitelist_file:
189 -consensus:blackorwhitelist:file $param_consensus_blackorwhitelist_file 214 -consensus:blackorwhitelist:file $param_consensus_blackorwhitelist_file
190 #end if 215 #end if
191 216
279 #end if 304 #end if
280 #if $param_algorithm_SignalToNoise_min_required_elements: 305 #if $param_algorithm_SignalToNoise_min_required_elements:
281 -algorithm:SignalToNoise:min_required_elements $param_algorithm_SignalToNoise_min_required_elements 306 -algorithm:SignalToNoise:min_required_elements $param_algorithm_SignalToNoise_min_required_elements
282 #end if 307 #end if
283 #if $param_algorithm_SignalToNoise_write_log_messages: 308 #if $param_algorithm_SignalToNoise_write_log_messages:
284 -algorithm:SignalToNoise:write_log_messages $param_algorithm_SignalToNoise_write_log_messages 309 -algorithm:SignalToNoise:write_log_messages
310 #if " " in str($param_algorithm_SignalToNoise_write_log_messages):
311 "$param_algorithm_SignalToNoise_write_log_messages"
312 #else
313 $param_algorithm_SignalToNoise_write_log_messages
314 #end if
285 #end if 315 #end if
286 #if $adv_opts.adv_opts_selector=='advanced': 316 #if $adv_opts.adv_opts_selector=='advanced':
287 #if $adv_opts.param_force: 317 #if $adv_opts.param_force:
288 -force 318 -force
289 #end if 319 #end if